CK740072

Overview
NameCK740072
Unique NameCK740072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3393 contig Csv1_Contig3393:1360..1992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740072 vs. ExPASy Swiss-Prot
Match: S23A2_RAT (Solute carrier family 23 member 2 OS=Rattus norvegicus GN=Slc23a2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1 
Query:    4 GLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSE--EFYSLPFNLN 354
            GLS LQF +LNS R  F+LGFSIF GL +P Y  +   + G   +       + ++NV  ++  FV GCVAF LDNT+        ++RG   W K  S KG+   +  E Y+LPF +N
Sbjct:  499 GLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGI-------DQVLNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIKKWKKGVS-KGNKSLDGMESYNLPFGMN 605
[Close]
BLAST of CK740072 vs. ExPASy Swiss-Prot
Match: S23A2_MOUSE (Solute carrier family 23 member 2 OS=Mus musculus GN=Slc23a2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    4 GLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSE--EFYSLPFNLN 354
            GLS LQF +LNS R  F+LGFSIF GL +P Y  +   + G   +       + ++NV  ++  FV GCVAF LDNT+        ++RG   W K  S KG    +  E Y+LPF +N
Sbjct:  500 GLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGI-------DQILNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIKKWKKGVS-KGSKSLDGMESYNLPFGMN 606
[Close]
BLAST of CK740072 vs. ExPASy Swiss-Prot
Match: S23A2_HUMAN (Solute carrier family 23 member 2 OS=Homo sapiens GN=SLC23A2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.175e-12
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:    4 GLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSE--EFYSLPFNLN 354
            GLS LQF +LNS R  F+LGFSIF GL +P Y  +   + G   +       + ++NV  ++  FV GCVAF LDNT+        ++RG   W K    KG+   +  E Y+LPF +N
Sbjct:  502 GLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGI-------DQVLNVLLTTAMFVGGCVAFILDNTI----PGTPEERGIRKWKKGVG-KGNKSLDGMESYNLPFGMN 608
[Close]
BLAST of CK740072 vs. ExPASy Swiss-Prot
Match: S23A2_XENTR (Solute carrier family 23 member 2 OS=Xenopus tropicalis GN=slc23a2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 GLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSE--EFYSLPFNL 351
            GLS LQF +LNS R  F+LGFSIF GL +P Y  +   + G   +       + ++NV  ++  FV GC AF LDNT+        ++RG   W K    KG +  E  E Y LPF +
Sbjct:  500 GLSNLQFVDLNSSRNLFVLGFSIFFGLMLPSYLKQNPLVTGIAEI-------DQVLNVLLTTAMFVGGCTAFILDNTI----PGTPEERGIRKW-KRGVGKGTSGIEGMESYDLPFGM 605
The following BLAST results are available for this feature:
BLAST of CK740072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
S23A2_RAT9.764e-1340.34Solute carrier family 23 member 2 OS=Rattus norveg... [more]
S23A2_MOUSE1.275e-1240.34Solute carrier family 23 member 2 OS=Mus musculus ... [more]
S23A2_HUMAN2.175e-1239.50Solute carrier family 23 member 2 OS=Homo sapiens ... [more]
S23A2_XENTR1.841e-1138.98Solute carrier family 23 member 2 OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6566 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740072 ID=CK740072; Name=CK740072; organism=Citrus sinensis; type=EST; length=633bp
GGAGGTCTTAGCTTCCTTCAGTTCTGTAACCTCAACAGTTTCCGAGTAAA
GTTCATATTAGGCTTCTCTATCTTCATCGGTCTGTCTGTGCCCCAATACT
TCAACGAGTACACTGCCATTAATGGTTTCGGTCCAGTTCACACTAGTGGA
AGATGGTTCAACGATATGGTAAACGTTCCTTTCTCCTCAGAACCATTTGT
TGCTGGTTGTGTGGCATTTTTCCTTGACAACACACTGCATAAAAAGGATG
GTCAAGTCAGGAAAGACAGGGGTAGGCATTGGTGGGACAAGTTCTGGTCC
TTCAAAGGCGACACAAGAAGTGAAGAATTTTACTCCCTGCCCTTCAATTT
AAACAAATATTTCCCATCTGTGTGATTCAATCGGTAACATGTATTTCTCT
TTGGGAAGTTTTCCAAAAGTCCTTGTGGGAACACACAAAATATCATCATT
GCTCTCTTGTGAATCTCTTATTACACGCTATAGCAGTAAAAGATAGTACC
TTCCTTTATAGGATGTGCCTTAGAGCATTTGTTGAACTGGTTTTTTCTTT
TCTGTAAATCCAACCGGAGACTGATGGATTCGAAGTAGCAATGAAGCAAT
TATATTTGCTTTTTCTTCAAAAAAAAAAAAAAA
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