CK740074 | Citrus Genome Database

Overview


Name	CK740074
Unique Name	CK740074
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	499

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 2.911e-12
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K   RA+VGA+LE+I++RR+ KPE+R A R+   +  KE+
Sbjct:   66 EVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEK 115

HSP 2 Score: 45.8246 bits (107), Expect = 2.911e-12
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            DS+VF F +SK    FH R  P ++ WT +YR+ HKK I
Sbjct:   25 DSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGI 63

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 3.776e-12
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.8986 bits (102), Expect = 3.776e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   24 TDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_BRABE (60S ribosomal protein L24 OS=Branchiostoma belcheri GN=RPL24 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 4.911e-12
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1

Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E ++KKR      + RAI GA+L  I  +R +KPEVR A RE A++  KE+
Sbjct:   65 EEIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEK 115

HSP 2 Score: 43.8986 bits (102), Expect = 4.911e-12
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 3

Query:    3 SDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            +D +V+ F N+KC+  F  +  P ++TWT +YR++HKK
Sbjct:   24 TDGRVYTFLNAKCEASFLMKRNPREITWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.368e-12
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1

Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E V KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE 114

HSP 2 Score: 43.5134 bits (101), Expect = 6.368e-12
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D +VF F N+KC+  F ++  P ++ WT +YR++HKK
Sbjct:   25 DGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK 61

BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 6.377e-12
Identity = 18/39 (46.15%), Postives = 25/39 (64.10%), Query Frame = 3

Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            DS++F F +SK    FH R  P ++ WT +YR+ HKK I
Sbjct:   25 DSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGI 63

HSP 2 Score: 45.0542 bits (105), Expect = 6.377e-12
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1

Query:  124 LAEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            + E V +KR        RA+VGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:   63 ITEEVARKRTRKSVKAQRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEK 115

The following BLAST results are available for this feature:

BLAST of CK740074 vs. ExPASy Swiss-Prot

BLAST of CK740074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29


Match Name	E-value	Identity	Description
RL24_ASHGO	2.911e-12	47.06	60S ribosomal protein L24 OS=Ashbya gossypii GN=RP...	[more]
RL24_RAT	3.776e-12	47.06	60S ribosomal protein L24 OS=Rattus norvegicus GN=...	[more]
RL24_MOUSE	3.776e-12	47.06	60S ribosomal protein L24 OS=Mus musculus GN=Rpl24...	[more]
RL24_MACFA	3.776e-12	47.06	60S ribosomal protein L24 OS=Macaca fascicularis G...	[more]
RL24_HUMAN	3.776e-12	47.06	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24...	[more]
RL24_FELCA	3.776e-12	47.06	60S ribosomal protein L24 OS=Felis catus GN=RPL24 ...	[more]
RL24_BOVIN	3.776e-12	47.06	60S ribosomal protein L24 OS=Bos taurus GN=RPL24 P...	[more]
RL24_BRABE	4.911e-12	45.10	60S ribosomal protein L24 OS=Branchiostoma belcher...	[more]
RL24_DANRE	6.368e-12	49.02	60S ribosomal protein L24 OS=Danio rerio GN=rpl24 ...	[more]
RL24_KLULA	6.377e-12	46.15	60S ribosomal protein L24 OS=Kluyveromyces lactis ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6568 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740074 ID=CK740074; Name=CK740074; organism=Citrus sinensis; type=EST; length=499bp
GCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGGTAC
TTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTACAG
GAAACAACACAAGAAGGATATTGCTTGCTGAGGCTGTAAAGAAAAAGCGC
CGCTCCACAAAGAAGCCATATTCAAGGGCTATTGTCGGTGCAACCTTGGA
AGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGCTC
GTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAGAT
GAAAAGAGGGCCAAGAAAGCTGAGGGGACATCCAAGTCAAAGACTCAAAG
CAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGGTG
GTGGTGGTGGAAAACGGGGAAGTGCTTCGTCTCTTCATTTCTTCCTGACT
ACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATTG