CK740074

Overview
NameCK740074
Unique NameCK740074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 8.282e-12
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K   RAIVGA+LE+I++RR+ KPEVR A R+   +  KE+
Sbjct:   66 EVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEK 115          

HSP 2 Score: 43.8986 bits (102), Expect = 8.282e-12
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            DS++F F NSK    F  R  P ++ WT +YR+ HKK I
Sbjct:   25 DSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGI 63          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 1.074e-11
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E V KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE 114          

HSP 2 Score: 42.3578 bits (98), Expect = 1.074e-11
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D +VF F N+KC+  F  +  P ++ WT +YR++HKK
Sbjct:   25 DGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKK 61          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_GILMI (60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 1.074e-11
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E V KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKE 114          

HSP 2 Score: 42.3578 bits (98), Expect = 1.074e-11
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D +VF F N+KC+  F  +  P ++ WT +YR++HKK
Sbjct:   25 DGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKK 61          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_ICTPU (60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.074e-11
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  127 AEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 279
            +E V KKR      + RAI GA+L  I  +R +KPEVR A RE A+R  KE
Sbjct:   64 SEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKE 114          

HSP 2 Score: 43.1282 bits (100), Expect = 1.074e-11
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D +VF F N+KC+  F  +  P ++ WT +YR++HKK
Sbjct:   25 DGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKK 61          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_PLUXY (60S ribosomal protein L24 OS=Plutella xylostella GN=RpL24 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.397e-11
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T+K Y RAIVGA+L  I  +R  KPEVR A RE A+++ KE+
Sbjct:   66 EQAKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQ 115          

HSP 2 Score: 39.2762 bits (90), Expect = 1.397e-11
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D + F F NSKC+     R  P K+TWT +YR++ KK
Sbjct:   25 DGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 61          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.814e-11
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  112 RRILLAEAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            R+ +  EA KK+ R T+K + RAIVGA+L  I  +R  KPEVR A R+ A++  KE+
Sbjct:   60 RKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQ 115          

HSP 2 Score: 42.3578 bits (98), Expect = 1.814e-11
Identity = 16/39 (41.03%), Postives = 26/39 (66.67%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            D + F F + KC+R +  +  P K+TWT +YR++H+K I
Sbjct:   25 DGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGI 63          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 2.355e-11
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:   66 EVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          

HSP 2 Score: 43.8986 bits (102), Expect = 2.355e-11
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            DS++F F NSK    F  R  P ++ WT ++RK HKK I
Sbjct:   25 DSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGI 63          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 2.355e-11
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:   66 EVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          

HSP 2 Score: 43.8986 bits (102), Expect = 2.355e-11
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 122
            DS++F F NSK    F  R  P ++ WT ++RK HKK I
Sbjct:   25 DSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGI 63          
BLAST of CK740074 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 3.058e-11
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  130 EAVKKKRRSTKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 282
            E  KK+ R T+K Y RAIVGA+L  I  +R  KPEVR A R+ A++  KE+
Sbjct:   66 EQTKKRTRRTQK-YQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQ 115          

HSP 2 Score: 40.4318 bits (93), Expect = 3.058e-11
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3
Query:    6 DSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKK 116
            D + F F NSKC+     R  P K+TWT +YR++ KK
Sbjct:   25 DGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 61          
The following BLAST results are available for this feature:
BLAST of CK740074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL24_CANGA8.282e-1250.9860S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24_PAGMA1.074e-1149.0260S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]
RL24_GILMI1.074e-1149.0260S ribosomal protein L24 OS=Gillichthys mirabilis... [more]
RL24_ICTPU1.074e-1149.0260S ribosomal protein L24 OS=Ictalurus punctatus G... [more]
RL24_PLUXY1.397e-1152.9460S ribosomal protein L24 OS=Plutella xylostella G... [more]
RL24_DROME1.814e-1147.3760S ribosomal protein L24 OS=Drosophila melanogast... [more]
RL24B_YEAST2.355e-1149.0260S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24A_YEAST2.355e-1149.0260S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_SPOFR3.058e-1150.9860S ribosomal protein L24 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6568 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740074 ID=CK740074; Name=CK740074; organism=Citrus sinensis; type=EST; length=499bp
GCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGGTAC
TTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTACAG
GAAACAACACAAGAAGGATATTGCTTGCTGAGGCTGTAAAGAAAAAGCGC
CGCTCCACAAAGAAGCCATATTCAAGGGCTATTGTCGGTGCAACCTTGGA
AGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGCTC
GTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAGAT
GAAAAGAGGGCCAAGAAAGCTGAGGGGACATCCAAGTCAAAGACTCAAAG
CAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGGTG
GTGGTGGTGGAAAACGGGGAAGTGCTTCGTCTCTTCATTTCTTCCTGACT
ACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATTG
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