CK740075

Overview
NameCK740075
Unique NameCK740075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:203..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINC----PDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATYKV LI    EE IN      DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:    1 MATYKVTLINE--EEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            YKV L TP G+   +      ++D A E   DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   45 MATYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 335
            MATY+V+LI+     +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINCP--DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATY+V+LI      +I  P  +D+ +L+AAEEA LDLP+SC +GACSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            YKV L TP G+   +      ++D   E   DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 335
            MA+Y+V+LI    + +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINCPDD--SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            M TY+V+LI      +I  P D  + ILDAAE+  ++LP+SC++G+CSSC  KVV G VDQSEQ FLD++Q+ +GF++ C +YP SD TI TH+E  L
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATY+V+LI    + +  I   +D+ IL+ A E G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+ +GF L C  YP S+ TI+TH+E  L
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATY+V++I  G  +      D  +LD+A+ AG+DLP SC  G C++C  +++SG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:    1 MATYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: PAAE_ECOLI (Probable phenylacetic acid degradation NADH oxidoreductase paaE OS=Escherichia coli (strain K12) GN=paaE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 3
Query:   57 KVKLITPGGEEEINC-PDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP-TSDVTIE 311
            KV +   G + EI    DD  ILDAA   G DLPY+C+ G C++C  KV+ G V       L+ D++  G+VL+C A P TSDV ++
Sbjct:  263 KVTVRQDGRDREIVLNADDESILDAALRQGADLPYACKGGVCATCKCKVLRGKVAMETNYSLEPDELAAGYVLSCQALPLTSDVVVD 349          
The following BLAST results are available for this feature:
BLAST of CK740075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_APHSA5.896e-2661.39Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE6.519e-2561.29Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FERH_ANAVT8.514e-2554.55Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO8.514e-2554.08Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_EQUAR1.897e-2460.22Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP4.226e-2453.54Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERV_ANAVT1.041e-2252.04Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FERH_FREDI1.041e-2252.04Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FER2_SYNP63.134e-1943.75Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
PAAE_ECOLI3.141e-1142.53Probable phenylacetic acid degradation NADH oxidor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6569 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740075 ID=CK740075; Name=CK740075; organism=Citrus sinensis; type=EST; length=635bp
CTATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCT
ACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTG
TCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATC
TTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTT
GTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCA
AATTGGAGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATG
TTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCT
CTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGAT
TATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGT
AATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCC
ATGAATGCGCATCGTACCTAGAGGGTGAGGGTTCTCATCCCATCCGAACA
TGGGACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTT
TTATGGCATCGGTATTTTCAACAAGTGGATTGATT
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