CK740075

Overview
NameCK740075
Unique NameCK740075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:203..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.353e-37
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   27 GGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            G R+   ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   37 GDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 3
Query:   18 ANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            A    R+  MA YKV L TP G++ I CP D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD Q+G GFVLTC AYPTSD TI+TH+EE L
Sbjct:   22 ARPASRMSCMA-YKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.424e-37
Identity = 71/97 (73.20%), Postives = 81/97 (83.51%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 338
            ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDV IETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QSFLDD Q+G+GFVLTC AYPTSDVTI TH+E  L
Sbjct:    1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            A+YKVKLITP G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G VDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:    1 ASYKVKLITPEGAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            ATYKVKL+TP G++E +CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+Q+ +G+VLTC A+PTSDV IETHKEEEL
Sbjct:    1 ATYKVKLVTPQGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 338
            +KVKL+TP G +E  CPDD +ILD AEE G++LPYSCRAG+CSSC GK+V G +DQS+QSFLDD+QI EG+VLTCAAYP SDV IETHKEEEL G
Sbjct:    2 FKVKLLTPDGPKEFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATYKVKL   G ++ I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV +G+VDQS+QSFLDD QIG+GFVLTC AYPTSD TI TH+EE L
Sbjct:    1 MATYKVKLSGEGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATYKV LITP GE   + PDD +ILD+A +AG DLP SCRAGACS+C GK+VSGTVDQSEQSFLDDDQI  G+VLTC AYP SDVTIET+KEEEL
Sbjct:    1 MATYKVTLITPDGEVSYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 3
Query:   48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 338
            A+YKVKLITP G  E +CPDD +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:    1 ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 97          
The following BLAST results are available for this feature:
BLAST of CK740075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_ORYSI4.353e-3770.59Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_CHLRE5.685e-3771.43Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_SCOJA7.424e-3773.20Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_CHLFU9.696e-3778.49Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_TOBAC1.654e-3674.74Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FERA_ALOMA1.654e-3672.63Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_LEUGL2.160e-3672.63Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_GUITH2.160e-3673.96Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER1_SYNP22.821e-3676.04Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_CAPAA3.685e-3672.16Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6569 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740075 ID=CK740075; Name=CK740075; organism=Citrus sinensis; type=EST; length=635bp
CTATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCT
ACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTG
TCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATC
TTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTT
GTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCA
AATTGGAGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATG
TTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCT
CTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGAT
TATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGT
AATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCC
ATGAATGCGCATCGTACCTAGAGGGTGAGGGTTCTCATCCCATCCGAACA
TGGGACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTT
TTATGGCATCGGTATTTTCAACAAGTGGATTGATT
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