CK740075

Overview
NameCK740075
Unique NameCK740075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 3
Query:   45 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MA+YKV LI    G  E I  PDD +ILD AEE G+DLPYSCRAGACS+C GK+  G +DQS+QSFLDDDQI  G+VLTC AYP SD TI TH+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 66/93 (70.97%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 3
Query:   45 MATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MATYKV L++   + +  I+C DD F+LDAAEE G++LPYSCRAGACS+C GKV  G +DQSEQ+FLDDDQ+G GFVLTC AYP SD T+  H+E+EL
Sbjct:    1 MATYKVTLLSEEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   45 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 335
            MATYKV+L     G +E I  PDD +ILDAAEEAGLDLP+SCR+G+CSSC G +  GTVDQS+Q+FLDDDQI  G VLTC AYPTS+  IETH+E+ +A
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 3
Query:   54 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            Y V L TPGG EEI   + +++LD+AE+ G+DLPYSCRAGACS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPTSD  I+TH+EE+L
Sbjct:    4 YTVTLSTPGGVEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   45 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MA YK+ L+    G +   NC +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQ++QSFLDDDQ+  G+VLTC AYP+SD TI TH E+EL
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 3
Query:   45 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            MA YK+ L++   G +   +C +D++ILDAAEEAG++LPYSCRAGACS+C GKV  G+VDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   48 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            A YK+ L++   G +   +C +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQS+QSFLDD+Q+ +G+VLTC AYP SD TI TH E+EL
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.828e-28
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 3
Query:   42 AMATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            A   +KVKL+ P G E E   PDD++IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD Q+ EG++LTC +YP +D  I THKEE+L
Sbjct:   57 AAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CK740075 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 3
Query:    6 FGLKANRG--GRVVAMATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 332
            FGL ++RG  G+V A  + KVKLI+P GEE EI   +D  IL++AE AGL+LPYSCR+G C +C GK+VSG VDQS  SFL+++QI +G++LTC A P  D  + THK+ +L
Sbjct:   36 FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
The following BLAST results are available for this feature:
BLAST of CK740075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_SYNP41.602e-3167.35Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_EQUAR2.733e-3170.97Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_ODOSI3.569e-3164.29Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER2_NOSMU6.088e-3165.66Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_RHOPL1.356e-3065.59Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_PORYE2.313e-3063.27Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_PORPU1.148e-2962.24Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_PORUM5.698e-2961.86Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER6_MAIZE2.828e-2858.16Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER4_ARATH4.083e-2754.46Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6569 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740075 ID=CK740075; Name=CK740075; organism=Citrus sinensis; type=EST; length=635bp
CTATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCT
ACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTG
TCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATC
TTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTT
GTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCA
AATTGGAGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATG
TTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCT
CTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGAT
TATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGT
AATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCC
ATGAATGCGCATCGTACCTAGAGGGTGAGGGTTCTCATCCCATCCGAACA
TGGGACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGTT
TTATGGCATCGGTATTTTCAACAAGTGGATTGATT
back to top