CK740078

Overview
NameCK740078
Unique NameCK740078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: MPAG1_ALNGL (Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.433e-24
Identity = 52/135 (38.52%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E P+ + A+R+FKAF+ D   LLPK  P+A  S+E +EG+GG GT+   TFP+G  +K VK+R+D +D  NF   +++ +G  +    EK   ++KI A+ +GG + K + + + K   E+  E +K
Sbjct:    1 MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGDALEKVCNEIKIVAAPDGGSILKISNKFHTKGDHEINAEQIK 135          

HSP 2 Score: 23.483 bits (49), Expect = 3.433e-24
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  473 GLYKVLEAYLVANPDLY 523
            GL K +E+YL+A+ D Y
Sbjct:  143 GLLKAVESYLLAHSDAY 159          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL+PK  PQA  S+E +EG+GG GT+    FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ +GGCV K + + + K   E+K E VK
Sbjct:    1 MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 56/135 (41.48%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+RMFKAF+ D   L+PK  PQA  S+E +EG+GG GT+    FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ +GGCV K + + + K   E+K E VK
Sbjct:    1 MGVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 55/135 (40.74%), Postives = 84/135 (62.22%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ +  NL+PK  PQA  S+E +EG+GG GT+    FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ +GGCV K + + + K   E+K E VK
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1J_BETVE (Major pollen allergen Bet v 1-J OS=Betula verrucosa GN=BETV1J PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL PK  PQA  S+E +EG+GG GT+   +FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ NGG + K   + + K   E+K E +K
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 55/135 (40.74%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL PK  PQA  S+E +EG+GG GT+   +FP+G  +K VK R+D +D+ NF   Y++ +G  I    EK   ++KI A+ +GG + K + + + K   E+K E VK
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1F_BETVE (Major pollen allergen Bet v 1-F/I OS=Betula verrucosa GN=BETV1F PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.436e-23
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL PK  PQA  S+E +EG+GG GT+   +FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ NGG + K   + + K   E+K E +K
Sbjct:    1 MGVFNYEIEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: BEV1E_BETVE (Major pollen allergen Bet v 1-E OS=Betula verrucosa GN=BETV1E PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.712e-23
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVK 452
            MGV  +E E  + + A+R+FKAF+ D  NL PK  PQA  S+E +EG+GG GT+   +FP+G  +K VK R+D +D+ NF   Y++ +G  +    EK   ++KI A+ NGG + K   + + K   E+K E +K
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIK 135          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: MPAC2_CARBE (Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 53/138 (38.41%), Postives = 86/138 (62.32%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAE 461
            MGV  +E E  + + A+R+FKAF+ D   L+PK +PQA  S+E +EG+GG GT+   TF +G   K VK+R++ +D+ NF   YT+ +GD +    EK  +++KI A+  GG + K +++ + K   E+  E +K A+
Sbjct:    1 MGVFNYEAETTSVIPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEEMKGAK 138          
BLAST of CK740078 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.935e-22
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:   51 MGVTRFEREYPAAVGASRMFKAFV-DSPNLLPKATPQAFKSIEVLEGDGGVGTVTLWTFPDGGHYKQVKQRIDALDNDNFTCKYTMYDGDGILAVAEKGVYDVKIEASGNGGCVYKFAAEVYVKDGEELKEEHVKDAERE 467
            MGVT +  E    V  +R+FKA V DS NL+PK  PQ  K+IE  EGDG +  +T   F +G   K +K +I  +D+ N   KY+M +GD +    E   YD+K EA GNGGCV K  AE + K    LK+E   + +++
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEA-EGDGSIKKMT---FVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQ 135          

HSP 2 Score: 30.0314 bits (66), Expect = 3.935e-22
Identity = 11/17 (64.71%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  476 LYKVLEAYLVANPDLYA 526
            L+K++EAYL+ANP +YA
Sbjct:  139 LFKIVEAYLLANPSVYA 155          
The following BLAST results are available for this feature:
BLAST of CK740078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MPAG1_ALNGL3.433e-2438.52Major pollen allergen Aln g 1 OS=Alnus glutinosa P... [more]
BEV1D_BETVE3.943e-2441.48Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]
BEV1L_BETVE5.150e-2441.48Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]
BEV1G_BETVE5.150e-2440.74Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
BEV1J_BETVE4.360e-2340.00Major pollen allergen Bet v 1-J OS=Betula verrucos... [more]
BEV1A_BETVE4.360e-2340.74Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
BEV1F_BETVE7.436e-2340.00Major pollen allergen Bet v 1-F/I OS=Betula verruc... [more]
BEV1E_BETVE9.712e-2340.00Major pollen allergen Bet v 1-E OS=Betula verrucos... [more]
MPAC2_CARBE2.826e-2238.41Major pollen allergen Car b 1 isoform 2 OS=Carpinu... [more]
PRS1_SOLTU3.935e-2241.43Pathogenesis-related protein STH-21 OS=Solanum tub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6572 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740078 ID=CK740078; Name=CK740078; organism=Citrus sinensis; type=EST; length=613bp
GCAAAAATATATCCATTTCTTTCTCTTTAAGCTAATAAATTATTATCAAC
ATGGGTGTCACTCGCTTTGAGAGAGAGTATCCGGCTGCTGTTGGTGCATC
AAGAATGTTCAAGGCTTTTGTTGACTCTCCCAATTTGTTGCCGAAGGCCA
CACCGCAAGCATTCAAGAGCATCGAGGTTCTCGAAGGAGATGGAGGCGTT
GGCACTGTCACGCTGTGGACCTTTCCTGATGGTGGTCATTACAAGCAAGT
GAAGCAAAGAATCGACGCACTTGACAATGACAATTTCACATGCAAGTACA
CCATGTACGACGGAGATGGGATCTTGGCAGTTGCAGAGAAAGGGGTGTAC
GATGTTAAGATCGAGGCTTCTGGCAATGGGGGATGCGTTTACAAGTTTGC
CGCGGAGGTCTACGTGAAGGATGGTGAAGAGCTCAAAGAAGAGCACGTCA
AGGACGCCGAAAGAGAGGAACGGGATTGTACAAGGTCCTGGAAGCCTATC
TAGTGGCTAACCCTGATCTCTACGCCTAAATTAATTAATCAATCATCACC
ATGCTTTGGCTTTTCCAGTTTCGATCGTCTGCTGCTTGCTATTTGAATAA
GTTTCGGTGACAT
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