CK740096

Overview
NameCK740096
Unique NameCK740096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.431e-30
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSR 155          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.431e-30
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSR 155          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.576e-29
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ +
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSK 154          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.576e-29
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ +
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQSNQLSK 154          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.926e-27
Identity = 57/119 (47.90%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKR 485
            +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L  ++V G+N  T+F+G+  T D+L S++RKW TLIEA VD KT D + +R+F + FTK+
Sbjct:   30 EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKK 148          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 51/127 (40.16%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WY + AP+ F+ R++G+T VT+T G ++A++ + HRV+EV+LGDL    E+ +   K  L+ + V     LTNF GM  T  K  SL RK    I+ ++D+ TTD + LR+F I FT R   Q ++
Sbjct:   26 EWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.583e-19
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLP 491
            +WY++KAP+ F     GKT+VT++   +  +  L  R F+++  DL  N EEHA RK   R  +V+GK+ +  F GM  T+DK++ ++RKWHTLIEA  D+   D   LR+F    TK+ P
Sbjct:   30 EWYNLKAPAIFPNNVCGKTMVTKSSNKQNLALLLIGRKFDINQADLTGNLEEHA-RKFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKTP 149          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.432e-14
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  144 IKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPN 494
            + AP  F  + +GKTL+ +       +  + +++++VSL D+L +EE +      ++  +      T F G++ T DK+ SL++KWHTLIE  V+ KT D + L+LF I  +K+  N
Sbjct:   29 VYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKEEFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKN 144          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 32/89 (35.96%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  240 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            R ++V+  DL    +  +RK   +  D++G   +  F GM  T+DK +++++KWHTLIEA  D+   D    R+F +G T+R P  VK+
Sbjct:   16 RRYDVNQADLTGNNDVGHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKK 104          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_METTP (30S ribosomal protein S3Ae OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 45/125 (36.00%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  135 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRL--FCIGFTKRLPNQVK 503
            WY + AP  F    VG+TL             L  RV E +LGDL N       K+R + + V G    T F G   TTD +RSLV++  + I+A VDV T+D + +R+   C    +   NQVK
Sbjct:   17 WYKVLAPEMFGRTPVGETLANDPNK-------LLGRVIETTLGDLTNNFSKQNTKLRFKIDAVAGDTAYTKFIGHEMTTDYIRSLVKRRTSRIDAVVDVTTSDGYLVRVKPSCFTVKRARANQVK 134          
The following BLAST results are available for this feature:
BLAST of CK740096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A2_LEIIN2.431e-3050.3940S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN2.431e-3050.3940S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A2_TRYCR1.576e-2948.8240S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR1.576e-2948.8240S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_TETTH1.926e-2747.9040S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_GIALA6.636e-2040.1640S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]
RS3A_NOSCE9.583e-1941.3240S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GUITH1.432e-1433.3340S ribosomal protein S3a OS=Guillardia theta PE=3... [more]
RS3A_ENCCU6.652e-1235.9640S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]
RS3A_METTP8.688e-1236.0030S ribosomal protein S3Ae OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740096 ID=CK740096; Name=CK740096; organism=Citrus sinensis; type=EST; length=507bp
CTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAAC
ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAA
GAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGG
CTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGG
ACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGTTTGA
GGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGGAAGA
TCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAACTTC
TGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTG
GCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAACTTCA
CATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTT
AAGAGGA
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