CK740096

Overview
NameCK740096
Unique NameCK740096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 86/125 (68.80%), Postives = 103/125 (82.40%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY+IKAP  F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLFCI FTKR PNQVK+
Sbjct:   27 DWYNIKAPGTFAVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKK 151
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P+QV++
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 148
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.017e-44
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQV++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.328e-44
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM  T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRK 152
The following BLAST results are available for this feature:
BLAST of CK740096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A_PYRTR7.785e-4568.8040S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_MOUSE7.785e-4568.0040S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_LACBS7.785e-4568.0040S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_HUMAN7.785e-4568.0040S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_GECJA7.785e-4568.0040S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_FELCA7.785e-4568.0040S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_EIMTE7.785e-4568.0040S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_BOVIN7.785e-4568.0040S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_ORYLA1.017e-4468.8040S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_XENTR1.328e-4468.0040S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740096 ID=CK740096; Name=CK740096; organism=Citrus sinensis; type=EST; length=507bp
CTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAAC
ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAA
GAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGG
CTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGG
ACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGTTTGA
GGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGGAAGA
TCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAACTTC
TGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTG
GCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAACTTCA
CATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTT
AAGAGGA
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