CK740096

Overview
NameCK740096
Unique NameCK740096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.504e-43
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.504e-43
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.504e-43
Identity = 82/125 (65.60%), Postives = 103/125 (82.40%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.271e-43
Identity = 82/125 (65.60%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY IKAP+ F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+H++RK++LR +++QGKN LTNF G+ FT+DKLRSLVRKW TLIEA + VKTTD++ LRLF I FTKR PNQVK+
Sbjct:   28 DWYGIKAPAPFNVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHSFRKVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFTKRRPNQVKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.271e-43
Identity = 84/125 (67.20%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.271e-43
Identity = 84/125 (67.20%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.271e-43
Identity = 84/125 (67.20%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.272e-43
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKR 485
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK RVFEVSL DL N+   E +YRK RL AEDVQ +NVLTNF GM  TTDKLRS+V+KW TLIEA VDV+TTD + LR+FCIGFT +
Sbjct:   29 DWYDVKAPSMFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNK 148          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.272e-43
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY IKAPS F++R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DWYQIKAPSSFQIRDVGKTLVNRTTGLKNANDSLKGRIIEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 4.272e-43
Identity = 83/125 (66.40%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
The following BLAST results are available for this feature:
BLAST of CK740096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A_ASPOR2.504e-4365.6040S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFN2.504e-4365.6040S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_ASPCL2.504e-4365.6040S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_NEUCR3.271e-4365.6040S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_AJECN3.271e-4367.2040S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECH3.271e-4367.2040S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECG3.271e-4367.2040S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_TRIIF4.272e-4371.6740S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_SCLS14.272e-4364.8040S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_PARBP4.272e-4366.4040S ribosomal protein S1 OS=Paracoccidioides brasi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740096 ID=CK740096; Name=CK740096; organism=Citrus sinensis; type=EST; length=507bp
CTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAAC
ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAA
GAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGG
CTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGG
ACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGTTTGA
GGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGGAAGA
TCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAACTTC
TGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTG
GCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAACTTCA
CATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTT
AAGAGGA
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