CK740096

Overview
NameCK740096
Unique NameCK740096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.287e-43
Identity = 82/125 (65.60%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY IKAP+ F +R+VGKTLV R+ G K A++ LK R+FEVSL DL  +E+HA+RKI+LR ++VQGKN LTNF G+ FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.243e-42
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.243e-42
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.243e-42
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.243e-42
Identity = 88/125 (70.40%), Postives = 99/125 (79.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  MS T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKK 150
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.623e-42
Identity = 88/125 (70.40%), Postives = 99/125 (79.20%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  MS T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKK 150
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.616e-42
Identity = 81/125 (64.80%), Postives = 101/125 (80.80%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V V+TTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.616e-42
Identity = 86/125 (68.80%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK RVFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GMS T DKL S+V+KW TLIEA VDVKTTD + LR+F IGFTK+  NQVK+
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKK 152
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.056e-42
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKK 149
[Close]
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.056e-42
Identity = 80/125 (64.00%), Postives = 101/125 (80.80%), Query Frame = 3 
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK RV EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+K+
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGLKNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKK 152
The following BLAST results are available for this feature:
BLAST of CK740096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A_MAGGR7.287e-4365.6040S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_CANDC1.243e-4264.0040S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW1.243e-4264.0040S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL1.243e-4264.0040S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_CAEBR1.243e-4270.4040S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_CAEEL1.623e-4270.4040S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_PODAN3.616e-4264.8040S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_APLCA3.616e-4268.8040S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_BRUMA8.056e-4268.0040S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A2_PICST8.056e-4264.0040S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740096 ID=CK740096; Name=CK740096; organism=Citrus sinensis; type=EST; length=507bp
CTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAAC
ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAA
GAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGG
CTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGG
ACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGTTTGA
GGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGGAAGA
TCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAACTTC
TGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTG
GCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAACTTCA
CATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTT
AAGAGGA
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