CK740096

Overview
NameCK740096
Unique NameCK740096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.052e-41
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            D Y +KAPS F  R+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR +++QGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DEYSVKAPSTFANRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQGDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.052e-41
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+H++RKI+LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V V TTD++ LRLF I FTKR PNQ+K+
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHSFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFTKRRPNQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.374e-41
Identity = 79/125 (63.20%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQ+K+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.998e-41
Identity = 79/125 (63.20%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK R+ E SL DL  ++E AYRK +LR ++VQG+N LTNF+GMSFT+DKLRSLVRKW +LIEA+ D++TTD + LR+F IGFT+R  NQVK+
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKK 151          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.998e-41
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.998e-41
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +W+DIKAPS F  RNVGKTL+ ++ G K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.222e-41
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            DWY+IKAPS F  R+VGKTLV R+ G ++A++ LK RV EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G  FT+DKLRSLVRKW TLIEA V VKT+D++ LRLF IGFTKR  NQVK+
Sbjct:   28 DWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKK 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.222e-41
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKR 506
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I FT++  NQVKR
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKR 152          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.222e-41
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFT 479
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N+   E ++RK +L AEDV G+NVL NF GM  TTDKLRS+V+KW TLIE  VDVKTTDN+ LR+FCIGFT
Sbjct:   29 DWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFT 146          
BLAST of CK740096 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 5.222e-41
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 3
Query:  132 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFT 479
            DWYD+KAP+ F+ R VGKTLV RTQGTKIAS+GLK RVFEVSL DL NE   E ++RK +L AE V G++VLTNF GM+ TTDKLRS+V+KW TLIE  VDVKTTD F LR+FCIGFT
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFT 146          
The following BLAST results are available for this feature:
BLAST of CK740096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A_EMENI1.052e-4164.8040S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_CHAGB1.052e-4164.8040S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_CANTT1.374e-4163.2040S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_MALGO3.998e-4163.2040S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A2_CLAL43.998e-4162.4040S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL43.998e-4162.4040S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_YARLI5.222e-4164.0040S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_KLULA5.222e-4164.0040S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_CULQU5.222e-4169.4940S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_ANOGA5.222e-4170.3440S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740096 ID=CK740096; Name=CK740096; organism=Citrus sinensis; type=EST; length=507bp
CTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAAC
ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAA
GAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATCAAGG
CTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGG
ACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGTTTGA
GGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGGAAGA
TCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAACTTC
TGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTG
GCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAACTTCA
CATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTT
AAGAGGA
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