CK740102

Overview
NameCK740102
Unique NameCK740102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:959..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 VEVSFTVYEDFAHYKSGVYKHITGDVMG------GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 222
            V V+F V   F  YKSGVY   T D  G       HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N CGI
Sbjct:  277 VSVAFQVINGFRMYKSGVY---TSDHCGTSPMDVNHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGI 352          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   28 DFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 222
            D  +YKSGV KH + D    H V L+G+G  +D + YW L N W   WG  G+F+IKR  N CGI
Sbjct:  269 DLTNYKSGVAKHCSVDHGLNHGVLLVGYGQENDVK-YWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   28 DFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNE----CGIEEDVVAGLPSSKNLVKEITSADMFE 297
            + + YKSGVYK    ++ G H V ++G+GTS D  DYW++ N W   WG  GY +++R  +E    C +   V    P   N    + S  +F+
Sbjct:  270 NMSDYKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEPTGKCAVA--VAPVYPIKSNSSSHLLSPSVFK 361          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 VEVSFTVYEDFAHYKSGVYKHITGDVMG------GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 222
            V V+F V + F  YKSGVY   T D  G       HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N C I
Sbjct:  276 VSVAFQVIDGFRQYKSGVY---TSDHCGTTPDDVNHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAI 351          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: TINAL_MOUSE (Tubulointerstitial nephritis antigen-like OS=Mus musculus GN=Tinagl1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 37/91 (40.66%), Postives = 47/91 (51.65%), Query Frame = 1
Query:    1 VEVSFTVYEDFAHYKSGVYKHITGDV--------MGGHAVKLIGWG--TSDDGED--YWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 237
            V+    V+EDF  Y+ G+Y H              G H+VK+ GWG  T  DG    YW  AN W   WG  G+F+I RG+NEC IE  V+
Sbjct:  362 VQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGTNECDIETFVL 452          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 VEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 222
            V  +F V  DF  Y+ G+Y     H T D +  HAV  +G+G  ++G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  249 VSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVN-HAVLAVGYG-EENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
BLAST of CK740102 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 VEVSFTVYEDFAHYKSGVYK----HITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 222
            V  +F V +DF  Y++G+Y     H T D +  HAV  +G+G  + G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  249 VSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVN-HAVLAVGYGEKN-GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
The following BLAST results are available for this feature:
BLAST of CK740102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ORYC_ORYSJ2.685e-1143.75Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATV_GVXN2.685e-1147.69Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CPR2_ARATH3.507e-1134.04Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
ALEU_HORVU4.580e-1142.50Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
TINAL_MOUSE5.982e-1140.66Tubulointerstitial nephritis antigen-like OS=Mus m... [more]
CATH_PIG5.982e-1142.31Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_HUMAN5.982e-1142.31Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6596 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740102 ID=CK740102; Name=CK740102; organism=Citrus sinensis; type=EST; length=521bp
GTTGAAGTTTCCTTCACAGTTTATGAGGATTTTGCTCACTACAAATCTGG
GGTCTACAAACACATCACAGGCGATGTAATGGGGGGTCATGCTGTTAAGC
TTATTGGTTGGGGAACTAGTGATGATGGCGAGGATTACTGGATTCTCGCT
AATCAGTGGAATAGAAGCTGGGGTGCGGATGGTTACTTCAAGATTAAAAG
AGGATCAAATGAGTGTGGTATTGAAGAGGATGTGGTTGCTGGTTTGCCTT
CATCCAAAAATCTTGTCAAAGAGATTACAAGTGCAGATATGTTTGAGGAT
GCTTCAGCTTGAGAGCAGACTTTGCTATACCTTCATGTTGTTATTTATAT
ATCAAATGTGTAGCTATAGGGGTGTATCGTTGAACCTAAGCTATCAAGGC
ATGAAATGGGAAGCTCCCGTCTTGCATAATTGAATGTATTAATGGAGTTT
AATGTTGTGTGTAAAAATAGAACCAGTTGTAATAACTTCGTTTCTCCTCG
CCGAATTATTCGTTTAGATGA
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