CK740106

Overview
NameCK740106
Unique NameCK740106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.000e-61
Identity = 108/129 (83.72%), Postives = 120/129 (93.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+ L+CEIEGNHL+AAAIIG DGSVWAQS NFPQ K EEIT IM+DF+EPGTLAPTGL+LGGTKYMVIQGE GAVIRGKKGPGGVT++KT+ ALIIGIYDEPMTPGQCNMIVERLGDYL++QG+
Sbjct:    3 WQTYVDERLMCEIEGNHLTAAAIIGQDGSVWAQSSNFPQFKSEEITAIMSDFDEPGTLAPTGLHLGGTKYMVIQGEAGAVIRGKKGPGGVTVRKTNQALIIGIYDEPMTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.143e-61
Identity = 104/129 (80.62%), Postives = 117/129 (90.70%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVDDHL+C+++G HL+A+AI+GHDGS+WAQS  FPQ KPEEITGIMNDF EPG+LAPTGLYL G KYMVIQGEPGAVIRGKKG GGVTIKKT  ALI GIY+EPMTPGQCNM+VER+GDYL+DQGL
Sbjct:    3 WQTYVDDHLMCDVDGQHLTASAIVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_ANACO (Profilin OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.194e-60
Identity = 103/128 (80.47%), Postives = 118/128 (92.19%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQAYVDDHL+CEI+G HLS+AAI+GHD +VWAQS NFPQ KPEEI+ I+NDF  PG+LAPTGLYLGGTKYMVIQGEPG VIRGKKG GG+T+KKT+ ALIIG+YDEPMTPGQCNM+VERLGDYL++QG
Sbjct:    3 WQAYVDDHLMCEIDGQHLSSAAILGHDSTVWAQSPNFPQFKPEEISAILNDFENPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGTGGITVKKTNLALIIGVYDEPMTPGQCNMVVERLGDYLLEQG 130          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.560e-60
Identity = 106/129 (82.17%), Postives = 120/129 (93.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVDDHL+C+I+G+HL+AAAI+GHDGSVWAQS  FP+ KPEEIT IM DF+EPG+LAPTGL+LGGTKYMVIQGE GAVIRGKKG GGVT+KKTS AL+ GIY+EP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    3 WQAYVDDHLMCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_LILLO (Profilin-2 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.560e-60
Identity = 105/128 (82.03%), Postives = 119/128 (92.97%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVD+HL+CEI+G HL+AAAIIGHDGS+WAQSE+FPQ+K E+ITG+MNDF EPG+LAPTGL+LG  KYMVIQGEPGAVIRGKKG GGVTIKKT+ ALI+GIYDEPMTPGQCNM+VERLGDYL DQG
Sbjct:    3 WQTYVDEHLMCEIDGQHLTAAAIIGHDGSIWAQSESFPQVKSEQITGVMNDFAEPGSLAPTGLFLGDNKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_MUSAC (Profilin OS=Musa acuminata PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.037e-60
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQAYVDDHLLC+I+G  L+AAAI+GHDGSVWAQS+ FPQ KPEEI  IM DF+EPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKG GGVTIKKT+ ALIIGIY+EPMTPGQCNM+VERLGDYL DQG
Sbjct:    3 WQAYVDDHLLCDIDGQCLTAAAIVGHDGSVWAQSDAFPQCKPEEIAAIMKDFDEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTNLALIIGIYNEPMTPGQCNMVVERLGDYLFDQG 130          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.660e-60
Identity = 103/129 (79.84%), Postives = 120/129 (93.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+HL+C+I+G+HL+AAAIIGHDGSVWAQS +FPQ KPEE+  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  ALIIGIYDEP+TPGQCNMIVERLGDYL++QG+
Sbjct:    3 WQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_WHEAT (Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.926e-60
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQAYVDDHL CEI+G HL++AAI+GHDGSVWA+S NFP+ KPEEI GI+ DF EPG LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+TIKKT  ALI+GIYDEPMTPGQCN++VERLGDYLIDQG
Sbjct:    3 WQAYVDDHLCCEIDGQHLTSAAILGHDGSVWAESPNFPKFKPEEIAGIVKDFEEPGHLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLIDQG 130          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_PHLPR (Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 100/129 (77.52%), Postives = 119/129 (92.25%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+HL+CEIEG+HL++AAI+GHDG+VWAQS +FPQ KPEEITGIM DF+EPG LAPTG+++ G KYMVIQGEPGAVIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:    3 WQTYVDEHLMCEIEGHHLASAAILGHDGTVWAQSADFPQFKPEEITGIMKDFDEPGHLAPTGMFVAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_APIGR (Profilin OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.252e-59
Identity = 108/132 (81.82%), Postives = 117/132 (88.64%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNH---LSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVDDHL+CE+EGN    L+AAAIIGHDGSVWAQS  FPQ+KPEEI GIM DF+EPG LAPTGLYLGG KYMVIQGEP AVIRGKKG GGVTIKKT  AL+ G+YDEP+TPGQCN+IVERLGDYLIDQGL
Sbjct:    3 WQAYVDDHLMCEVEGNPGQTLTAAAIIGHDGSVWAQSSTFPQIKPEEIAGIMKDFDEPGHLAPTGLYLGGAKYMVIQGEPNAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNVIVERLGDYLIDQGL 134          
The following BLAST results are available for this feature:
BLAST of CK740106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PROF1_HEVBR7.000e-6183.72Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_LILLO9.143e-6180.62Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_ANACO1.194e-6080.47Profilin OS=Ananas comosus PE=1 SV=1[more]
PROF_PYRCO1.560e-6082.17Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF2_LILLO1.560e-6082.03Profilin-2 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_MUSAC2.037e-6084.38Profilin OS=Musa acuminata PE=1 SV=1[more]
PROF3_HEVBR2.660e-6079.84Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF2_WHEAT5.926e-6081.25Profilin-2 OS=Triticum aestivum GN=PRO2 PE=2 SV=1[more]
PROF2_PHLPR1.724e-5977.52Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1[more]
PROF_APIGR2.252e-5981.82Profilin OS=Apium graveolens PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6600 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740106 ID=CK740106; Name=CK740106; organism=Citrus sinensis; type=EST; length=622bp
CAAAAATTAAGTCTTAAACACACTCATTTGTAAAAAGGCTTCAGGAAAAA
AAAAAATTCACAGAGAAATCAGAGGAATCATCAAAGCAGAAAAAGATGTC
GTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGAGGGTAACC
ATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTTGGGCCCAG
AGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGTATCATGAA
TGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTATCTTGGTG
GCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGG
AAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCGGCCTTAAT
CATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAACATGATTG
TTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGGTGGTTTGC
ATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGCTCGCACTG
TTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGGGAACTGTG
TGTGGAAAGGAAAGGTTTGGTG
back to top