CK740106

Overview
NameCK740106
Unique NameCK740106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2352 contig Csv1_Contig2352:125..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.780e-56
Identity = 99/129 (76.74%), Postives = 115/129 (89.15%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVDDHL+C+I+GN L+AAAI+G DGSVW+QS  FP  + EEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+ +KKT+ ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:    3 WQAYVDDHLMCDIDGNRLTAAAILGQDGSVWSQSATFPAFRLEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGIIVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_ARATH (Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.856e-56
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ+YVDDHL+CE+EGNHL+ AAI G DGSVWAQS  FPQLKP EI GI  DF E G LAPTGL+LGG KYMV+QGE GAVIRGKKGPGGVTIKKT+ AL+ GIYDEPMT GQCN++VERLGDYLI+ GL
Sbjct:    3 WQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESGL 131          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF4_ARATH (Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.157e-55
Identity = 97/132 (73.48%), Postives = 117/132 (88.64%), Query Frame = 3
Query:  102 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVD+HL+C++   +G+HL+AAAIIGHDGSVWAQS NFPQ KP+EIT IM DF+EPG LAPTG++L G KYMVIQGEP AVIRGKKG GG+TIKKT  +++ G+Y+EP+TPGQCNM+VERLGDYLI+QGL
Sbjct:    3 WQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEPGHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQGL 134          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.973e-55
Identity = 99/131 (75.57%), Postives = 115/131 (87.79%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEG---NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVDDHL+ +IEG   +HL+AAAI+GHDGSVWAQS  FP+ KPEEIT IM DF+EPG LAPTGL+LGG KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI GIY+EP+TPGQCNM+VE++ DYL+DQG
Sbjct:    3 WQTYVDDHLMADIEGQQGHHLAAAAILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIRDYLVDQG 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.365e-55
Identity = 99/131 (75.57%), Postives = 115/131 (87.79%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+HL+C+I+G  ++  A+AI+GHDGSVWAQS +FPQ KP+EITGIM DF EPG LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+TIKKT  AL+ GIY+EP+TPGQCNM+VERLGDYLIDQGL
Sbjct:    3 WQTYVDEHLMCDIDGQASNSLASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.791e-55
Identity = 97/130 (74.62%), Postives = 114/130 (87.69%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVDDHL+ + EG   HL+AAAI+GHDGSVWAQS +FP+ KPEEIT IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI G+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:    3 WQTYVDDHLMVDFEGQGQHLAAAAILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGLYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.346e-54
Identity = 93/131 (70.99%), Postives = 116/131 (88.55%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEG--NHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVD+HL+C+IEG  +HL++AAI+GHDG+VWAQS NFPQ KPEE+ GI+ +F++ GTLAPTG+++ G KYMV+QGE GAVIRGKKG GG+ IKKT  AL++GIYDEP+ PGQCNM+VERLGDYLIDQG+
Sbjct:    3 WQAYVDEHLMCDIEGTGHHLTSAAILGHDGTVWAQSSNFPQFKPEEMKGIITEFDQAGTLAPTGMFIAGAKYMVLQGEQGAVIRGKKGAGGICIKKTGQALVMGIYDEPVAPGQCNMVVERLGDYLIDQGM 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF3_ARATH (Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 93/132 (70.45%), Postives = 114/132 (86.36%), Query Frame = 3
Query:  102 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+HL+C++   +G+HL+AAAI+GHDGSVWAQS NFPQ K +E + IM DF+EPG LAPTGL++ G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY+EP+TPGQCNM+VERLGDYL++QGL
Sbjct:    3 WQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEPGHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQGL 134          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_ARTVU (Profilin-2 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 2.412e-53
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVDDHL+C+IEG   HL+AAAI+G DG+VWA+S+ FP+ KPEE+ GI+N+FNE GTLAPTGL+LGG KYMV+QGE GAVIRGKKG GG+ IKKT  A+++GIYDEP+ PGQCNMIVERLGDYL+DQ +
Sbjct:    3 WQTYVDDHLMCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_BRANA (Profilin OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.017e-53
Identity = 94/132 (71.21%), Postives = 111/132 (84.09%), Query Frame = 3
Query:  102 WQAYVDDHLLCEI---EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD+HL+C++   +G+HL+AAAI GHDGSVWAQS NFPQ K +E   IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT  + + GIY+EP+TPGQCNM+VERLGDYLI+Q L
Sbjct:    3 WQTYVDEHLMCDVGDGQGHHLAAAAIFGHDGSVWAQSANFPQFKGQEFANIMKDFDEPGHLAPTGLFLAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLIEQDL 134          
The following BLAST results are available for this feature:
BLAST of CK740106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PROF1_CITSI6.780e-5676.74Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF2_ARATH8.856e-5677.52Profilin-2 OS=Arabidopsis thaliana GN=PRO2 PE=1 SV... [more]
PROF4_ARATH1.157e-5573.48Profilin-4 OS=Arabidopsis thaliana GN=PRO4 PE=2 SV... [more]
PROF1_TOBAC1.973e-5575.57Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF_BETVE3.365e-5575.57Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]
PROF3_TOBAC9.791e-5574.62Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF3_AMBAR6.346e-5470.99Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF3_ARATH1.414e-5370.45Profilin-3 OS=Arabidopsis thaliana GN=PRO3 PE=2 SV... [more]
PROF2_ARTVU2.412e-5371.76Profilin-2 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRANA7.017e-5371.21Profilin OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6600 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740106 ID=CK740106; Name=CK740106; organism=Citrus sinensis; type=EST; length=622bp
CAAAAATTAAGTCTTAAACACACTCATTTGTAAAAAGGCTTCAGGAAAAA
AAAAAATTCACAGAGAAATCAGAGGAATCATCAAAGCAGAAAAAGATGTC
GTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGAGGGTAACC
ATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTTGGGCCCAG
AGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGTATCATGAA
TGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTATCTTGGTG
GCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGG
AAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCGGCCTTAAT
CATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAACATGATTG
TTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGGTGGTTTGC
ATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGCTCGCACTG
TTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGGGAACTGTG
TGTGGAAAGGAAAGGTTTGGTG
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