CK740106

Overview
NameCK740106
Unique NameCK740106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 91/131 (69.47%), Postives = 114/131 (87.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQAYVD+HL+C+IEG   HL++AAI+G DG+VWAQS  FPQ KPEE+ GI+ +F+E GTLAPTG+++ G KYMV+QGEPGAVIRGKKG GG+ IKKT  A+I+GIYDEP+ PGQCNM+VERLGDYL++QG+
Sbjct:    3 WQAYVDEHLMCDIEGTGQHLTSAAILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLLEQGM 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 5.029e-51
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGN--HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVDDHL+C+IEG   HL++AAI G DG+VWA+S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYDEP+ PGQCNM+VERLGDYL+DQG+
Sbjct:    3 WQTYVDDHLMCDIEGTGQHLTSAAIFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 488
            WQ YVD HL+       ++ AAI G DGS+WA+S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y EP+ P QC ++VE+LGD+LI   L
Sbjct:    3 WQQYVDQHLVAT---QCVTMAAICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQAYVDD L   +   H+  AAIIGHDG+VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y+E + PGQ   +VE+L DYL + G
Sbjct:    3 WQAYVDDQL---VGTGHVIGAAIIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 58/129 (44.96%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIG-HDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVD+ L     G  LS  AI+G +DG VWA+S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYD+ + PG   +IVE+LGDYL D G
Sbjct:    3 WQQYVDEQLT----GAGLSQGAILGANDGGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVD +L   +    ++ AAIIGHDG+ WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y+E + PG    +VE+L DYLI QG
Sbjct:    3 WQTYVDTNL---VGTGAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVD+ LL       ++ A I GHDG++WAQS  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY++P+ P Q   +VE+LGDYLI  G
Sbjct:    3 WQDYVDNQLLAS---QCVTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  105 QAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            Q YVD  LL       ++ AAI GHDG++WA+SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y++P+ P Q   +VE+LGDYL+  G
Sbjct:    4 QDYVDKQLLAS---RCVTKAAIAGHDGNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.975e-19
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 485
            WQ YVD  L+       ++ AAI GHDG+VWA+SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct:    3 WQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of CK740106 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  102 WQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLID 479
            WQAYVD++LL    G   ++AA++G  DGSVWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YD+ + PG    I E+L DYLID
Sbjct:    3 WQAYVDNNLL----GAGFASAALLGAADGSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLID 121          
The following BLAST results are available for this feature:
BLAST of CK740106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PROF_HELAN3.482e-5269.47Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF1_ARTVU5.029e-5169.47Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRABE4.905e-2241.86Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF1_PHYPO4.905e-2243.75Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF1_DICDI3.179e-2144.96Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF2_ACACA4.590e-2041.41Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF_DROME5.995e-2040.63Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF_APIME2.278e-1940.16Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF_BOMMO2.975e-1939.84Profilin OS=Bombyx mori PE=2 SV=1[more]
PROF2_DICDI4.297e-1840.94Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6600 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740106 ID=CK740106; Name=CK740106; organism=Citrus sinensis; type=EST; length=622bp
CAAAAATTAAGTCTTAAACACACTCATTTGTAAAAAGGCTTCAGGAAAAA
AAAAAATTCACAGAGAAATCAGAGGAATCATCAAAGCAGAAAAAGATGTC
GTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGAGGGTAACC
ATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTTGGGCCCAG
AGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGTATCATGAA
TGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTATCTTGGTG
GCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGG
AAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCGGCCTTAAT
CATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAACATGATTG
TTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGGTGGTTTGC
ATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGCTCGCACTG
TTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGGGAACTGTG
TGTGGAAAGGAAAGGTTTGGTG
back to top