CK740107

Overview
NameCK740107
Unique NameCK740107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.417e-33
Identity = 77/164 (46.95%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTV 492
            DD IP A  A+A  G SW+D D    +V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G+Y V  K D ++DL +  + E T+L   VSEA+V RA+ QLK+S+LL +DGT+ VAEDIGRQ++T GRR+  AE+   ID+V A  V
Sbjct:  274 DDTIPTANIAIAVEGVSWSDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDV 437          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.158e-33
Identity = 70/170 (41.18%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVATDL 513
            DD+ PL  FAVA     WTDPD   L ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P+ ++DL   ++ E  ++A   ++ +V R + +L ++ L+  DGTS V E IGRQ+LT GRR+   E++ RI+ +  + V+RVA+ L
Sbjct:  268 DDEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTL 437          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.200e-32
Identity = 67/168 (39.88%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVAT 507
            DD +P A  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   F+  Y +TGL G + V     ++D+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDAS V+ + +
Sbjct:  279 DDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICS 446          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.200e-32
Identity = 67/168 (39.88%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDC-LNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            DD++P A  A+A  G  W+ PD   +MVMQ++ G+W+++      + S L+  +  N +A S M+F+T+Y DTGL+G+Y V++    L+D  +  + E T+++   +E +V RA++QLK+ LLL +DGT+ VAEDIGRQ++T G+R+  A++   +D+V    +KRVA
Sbjct:  264 DDELPTAHVAIAVEGVGWSSPDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSENLMNLDDTLHFTLKEWTRMSIAPTEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVA 431          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.467e-30
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVATDL 513
            DDD P A  A+A  G SW  PD    +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    ++DL +  +    +L    + A+V RA+ QL++SLLL +D T+ +AEDIGRQLLT GRR+   E+  RI  +    V RVA+++
Sbjct:  256 DDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEM 425          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 57/162 (35.19%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLND--LAYAIMYETTKL-AYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSV 477
            ++ +P    A+A  G SW+ PD    +  QA++G+W++    G +  S LA     N  +A S M+F+T+Y D+GL+G+Y V   +  N   +   I+ E  ++ + ++S+A+V RA+ QLK++LLL +DG++ + EDIGRQ++T G+R+   E+F ++D +
Sbjct:  260 ENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKI 421          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.066e-20
Identity = 62/184 (33.70%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   16 PLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELA----------------QRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP------DCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRV 501
            PL   AVAF     + PD+I + V++ +LGS++++     +     A                 + G N I  S+ AF   Y D GL G YA+A+P      +  N L YA M E  +++  +SE +  RA+NQLK   +L +DGT+ +A+DIGRQ+L++G R+P A  F ++D++    + RV
Sbjct:  259 PLTHVAVAFQTPGISHPDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPI-HSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYA-MRELIRVSRNISEEEFERAKNQLKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRV 440          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.551e-19
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLND---LAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVK 495
            +D++P    A A  G  +   D++AL +    +G W+      +   S L Q++G +    ++  FN NYKDTGLFG+Y VA    LND   +  ++ +E   LA   +E +V  A+NQ +++L  +++  +  A    ++LL  G     +EL A+I  VDA  V+
Sbjct:  267 NDNVPHMYAAFAVEGVGYAHKDALALQIANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAGAVR 433          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.551e-19
Identity = 61/170 (35.88%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINE--IAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAI---MYET-TKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            L    + F G     PD  AL  +Q +LG     S GG  K M S L   V +N+    E+ +AFN +Y D+G+FG+     P         I   MY T      R++E +V+RA+NQLKSSLL++++      ED+GRQ+L +GR+IP  E+ ++I+ +    + RVA
Sbjct:  256 LFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHV-LNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA 424          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.869e-18
Identity = 62/166 (37.35%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   34 VAFAGASWTDPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYE----TTKLAYR-VSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            +AF G + +D D  AL  +Q +LG     S GG  K M S L   V +N+    ES +AFN +Y D+GLFG+ A   P     +   +  E    TT   Y  + E +V+RA+NQL+SSLL++++      ED+GRQ+  +GR+IP  E+  RI+ +    ++RVA
Sbjct:  361 LAFEGLAISDDDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTNV-LNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRELHALTTDHGYSALGELEVSRAKNQLRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVA 525          
The following BLAST results are available for this feature:
BLAST of CK740107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPB_NEUCR1.417e-3346.95Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI3.158e-3341.18Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_HUMAN1.200e-3239.88Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_LENED1.200e-3239.88Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO1.467e-3040.94Probable mitochondrial-processing peptidase subuni... [more]
MPPB_YEAST5.053e-2335.19Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_EUGGR3.066e-2033.70Ubiquinol-cytochrome-c reductase complex core prot... [more]
UCR1_CAEEL7.551e-1931.14Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPA_YEAST7.551e-1935.88Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_NEUCR2.869e-1837.35Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740107 ID=CK740107; Name=CK740107; organism=Citrus sinensis; type=EST; length=514bp
ATTGATGACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGC
ATCTTGGACAGATCCAGATTCCATTGCCCTGATGGTTATGCAGGCAATGT
TGGGTTCATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAG
CTGGCACAGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTT
CAACACGAACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTA
AGCCGGATTGCTTAAATGATTTGGCCTATGCAATTATGTACGAGACTACC
AAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATCA
GTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCTG
AAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGCT
GAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCGT
TGCAACAGATTTAT
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