CK740107

Overview
NameCK740107
Unique NameCK740107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_SCHPO (Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe GN=mas2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.860e-17
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   34 VAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEI-----AESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTY-GRRIPFAELFARIDSVDASTVKRVA 504
            +A  G   TDPD  AL  +Q +LG     S GG   G  +  R+ +N +      E+ MAFN +Y D+GLFG++     D  +  A  I+ E       V+  +  RA+NQLKSSLL++++      ED+GRQ+ T  G  I   E+  +ID++  S + RVA
Sbjct:  291 IAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGP--GKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVA 451          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   28 FAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIAE--SMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            FAVAF    W  + +++   V+Q ++G     S GG  K M S L +RV +NE  E  S  AF + + DTGLFG+Y  + P            E   +A  +V++A + RA+   KS++L++++     AEDIGRQ+LTYG R P  +    + SVD  T+K +A
Sbjct:  310 FAVAFEVPGWNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRV-LNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAGGKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQF---LKSVDQLTLKDIA 470          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.814e-16
Identity = 60/169 (35.50%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVATDL 513
            L    VAF    +T PD   +  +Q ++G     S GG  K M S L   V +N     ES  AF   Y  T LFG+ A   P     L   +  E   +A  +S+ +V RA+NQLKSSLL++++      EDIGRQ+L   +R+   EL   I +V    + RVA  L
Sbjct:  259 LTHVQVAFPVPPFTHPDMFPVSTLQVLMGGGGAFSAGGPGKGMYSRLYTNV-LNRYRWMESCAAFQHAYSSTSLFGISASCVPSFNPHLCNVLAGEFVHMARNLSDEEVARAKNQLKSSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEAL 426          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 57/176 (32.39%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   10 DIPLAQFAVAFA--GASWTDPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIAE--SMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVATDL 513
            D  +  FA+AF   G   ++ +S+ L V+Q ++G     S GG  K M S L  RV +N+  +  +  AF++ Y +TGLFG+      D         + E   +A    V +  + RA+   KS++L++++     +EDIGRQLLTYG R P       ID+V A  +  V   L
Sbjct:  301 DAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRV-LNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKL 475          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   28 FAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRV-GINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 504
            FA+AF    W  + ++I   V+Q ++G     S GG  K M S L  R+   ++  +S  AF + + +TGLFG+Y    P+  +     +  E   +A  +V++  + RA+   KS++L++++     AEDIGRQ+LTYG R P  +    + +VD  T+K +A
Sbjct:  306 FALAFEVPGWNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVADGKVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQF---LKTVDQLTLKDIA 466          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 49/171 (28.65%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVATDL 513
            L    V     S+ + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T+ R++P  EL   I +V    +KRVA+ +
Sbjct:  316 LTHIMVGLESCSFLEDDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPH-ELCTLIRNVKPEDIKRVASKM 483          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 49/171 (28.65%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVATDL 513
            L    +     S+ + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   +  E   +A  V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL A I  V    +KRVA+ +
Sbjct:  317 LTHIMIGLESCSFLEGDFIPFAVLNMMMGGGGSFSAGGP--GKGMFTRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIVTREFVLMAGTVDVVELERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPH-ELCALIRDVKPEDIKRVASKM 484          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 50/171 (29.24%), Postives = 84/171 (49.12%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVATDL 513
            L    V     S+ + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   ++  V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL   I +V    VKRVA+ +
Sbjct:  317 LTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMSGTVDAVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPH-ELCTLIRNVKPEDVKRVASKM 484          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVATDL 513
            L    V     S+ + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL   I +V    VKRVA+ +
Sbjct:  317 LTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPH-ELCTLIRNVKPEDVKRVASKM 484          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   61 DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVATDL 513
            + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T+ R++P  EL   I +V    +KRVA+ +
Sbjct:  330 EEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPH-ELCTLIRNVKPEDIKRVASKM 483          
The following BLAST results are available for this feature:
BLAST of CK740107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPA_SCHPO1.860e-1735.58Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_ARATH2.686e-1636.36Probable mitochondrial-processing peptidase subuni... [more]
MPPA_BLAEM7.814e-1635.50Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_SOLTU2.274e-1532.39Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH5.600e-1432.32Probable mitochondrial-processing peptidase subuni... [more]
MPPA_MOUSE2.353e-1228.65Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN2.353e-1228.65Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_PONAB3.073e-1229.24Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN4.013e-1229.24Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT3.397e-1129.30Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740107 ID=CK740107; Name=CK740107; organism=Citrus sinensis; type=EST; length=514bp
ATTGATGACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGC
ATCTTGGACAGATCCAGATTCCATTGCCCTGATGGTTATGCAGGCAATGT
TGGGTTCATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAG
CTGGCACAGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTT
CAACACGAACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTA
AGCCGGATTGCTTAAATGATTTGGCCTATGCAATTATGTACGAGACTACC
AAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATCA
GTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCTG
AAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGCT
GAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCGT
TGCAACAGATTTAT
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