CK740107

Overview
NameCK740107
Unique NameCK740107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSV-DASTVK 495
            L   A+    A+  + ++ A  V+Q +LG+   +   G +  S L+Q V   ++    + AFN +Y D+GLFG+Y V++     D+  A   +   +A   +S ADV  A+N+LK+  L+ ++ +     +IG Q L  G  +P   +  +ID+V DA  VK
Sbjct:  265 LVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQSVAKGSQQPFDVSAFNASYSDSGLFGIYTVSQAAAAGDVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVK 425          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 48/162 (29.63%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   19 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAE-SMMAFNTNYKDTGLFGVYAVAKPDCLNDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSV-DASTVK 495
            L   A+    A+  + ++ A  V+Q +LG+   +   G +  S L+Q V         + AFN +Y D+GLFG+Y +++     ++  A   +   +A   +S ADV  A+N+LK+  L+ ++ +     +IG Q L  G  +P + +  +IDSV DA  VK
Sbjct:  266 LVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQSVAKGSHQPFDVSAFNASYSDSGLFGIYTISQAAAAGEVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQALAAGSYMPPSTVLQQIDSVADADVVK 426          
BLAST of CK740107 vs. ExPASy Swiss-Prot
Match: QCR1_YEAST (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=COR1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 42/167 (25.15%), Postives = 81/167 (48.50%), Query Frame = 1
Query:    4 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV-YAVAKPDCLNDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPV--AEDIGRQLLTYGRRIPFAELFARIDSVDASTVK 495
            DD +P A  ++A  G     P+     +   + GS+N      +  G +L   +   ++ ++   F+ +YKD+GL+G   A      ++DL +  + +  +L   V++ +V RA++ LK  L    +  +PV  A  +G ++L  G ++   E F +ID++    VK
Sbjct:  253 DDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVK 419          
The following BLAST results are available for this feature:
BLAST of CK740107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QCR2_RAT5.795e-1130.25Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_MOUSE7.568e-1129.63Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_YEAST7.568e-1125.15Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740107 ID=CK740107; Name=CK740107; organism=Citrus sinensis; type=EST; length=514bp
ATTGATGACGATATTCCTTTGGCACAATTTGCGGTTGCTTTCGCTGGAGC
ATCTTGGACAGATCCAGATTCCATTGCCCTGATGGTTATGCAGGCAATGT
TGGGTTCATGGAATAAAAATTCAGTGGGTGGAAAGCACATGGGTTCCGAG
CTGGCACAGAGAGTTGGCATTAATGAAATTGCAGAAAGCATGATGGCCTT
CAACACGAACTACAAAGACACTGGTCTGTTTGGTGTTTATGCTGTTGCTA
AGCCGGATTGCTTAAATGATTTGGCCTATGCAATTATGTACGAGACTACC
AAGTTAGCTTATCGGGTTTCAGAAGCTGATGTCACTCGTGCCCGTAATCA
GTTGAAATCATCCCTGTTGCTTCACATTGATGGAACAAGCCCTGTAGCTG
AAGATATTGGACGCCAGCTGCTTACATATGGTCGAAGAATCCCATTTGCT
GAATTGTTTGCTAGGATAGACTCCGTAGATGCAAGCACTGTCAAGCGCGT
TGCAACAGATTTAT
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