CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.382e-52
Identity = 101/170 (59.41%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            RK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K  L +A+E++GADIV +AL AP   IAHNA         KV + E   G++A+T  Y +M
Sbjct:  320 RKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDM 488          

HSP 2 Score: 33.8834 bits (76), Expect = 4.382e-52
Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG +  + D+G+ +EN +++
Sbjct:  285 KAMLEDIAILTGGQLISEDIGIKLENVTLD 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.711e-52
Identity = 102/171 (59.65%), Postives = 131/171 (76.61%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +K+TI KD+TTI+A   +K EIQ RIAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK K  D +E++GADIV++AL AP   IA NA         +VKDS++  GYNA T ++E+++
Sbjct:  319 QKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSDFNIGYNAATGEFEDLI 488          

HSP 2 Score: 31.187 bits (69), Expect = 5.711e-52
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KALLQDIAI+T  +  + ++GL ++  S+E
Sbjct:  284 KALLQDIAILTDGQLISEEIGLSLDTASLE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.802e-51
Identity = 101/170 (59.41%), Postives = 128/170 (75.29%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            RK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K KL +A+E++GA+IV +AL AP   IAHNA         KV + E   G++A+T  Y +M
Sbjct:  320 RKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEMPFGFDALTGTYVDM 488          

HSP 2 Score: 30.0314 bits (66), Expect = 2.802e-51
Identity = 11/30 (36.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG +  + D+G+ ++  +++
Sbjct:  285 KAMLEDIAILTGGQLISEDVGIKLDKVTLD 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.739e-50
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKVTI KD TTI+A   +K  ++ RIAQ+ K++ +TDS +D EKL ER+AKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HL+  + AIK  L D DE+ GAD++ +AL AP   IA NA         KV++ ++  GY+AM  ++ +ML
Sbjct:  320 RKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLAD-DEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELDFNIGYDAMKGEFVDML 489          

HSP 2 Score: 35.8094 bits (81), Expect = 6.739e-50
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA++TG +  + D+GL +EN +++
Sbjct:  285 KAMLQDIAVLTGGDVISEDIGLKLENVTID 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.243e-48
Identity = 98/171 (57.31%), Postives = 128/171 (74.85%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RK+TI KD+TTI+A+  ++  ++AR AQ+K+++ ETDS YD EKL ER+AKLSGGVAVIKVGAATETEL+DRKLRIEDA NAT AAI EGIVPGGG AL+HL+  +    D L   +E++GA I+QKAL  P   IA NA         KV++ E+  G+NAMT++YE+++
Sbjct:  320 RKMTITKDNTTIVAEG-NEAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSL-SGEEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLEFNFGFNAMTNEYEDLV 488          

HSP 2 Score: 33.113 bits (74), Expect = 1.243e-48
Identity = 14/31 (45.16%), Postives = 22/31 (70.97%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIA++T  E  + D G+ +EN + +Q
Sbjct:  285 KAMLQDIAVLTDGEVISEDTGIKLENVTTDQ 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.587e-48
Identity = 95/171 (55.56%), Postives = 127/171 (74.27%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +K+TI KD+T I+A   +K ++ ARIAQ+++ L ETDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEG+VPGGG  L+HL+  + +++  L  ADE+LG +IV +AL AP   IA NA         K++D ++  GYNA+T +YE+++
Sbjct:  320 QKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKDFNFGYNALTGQYEDLV 490          

HSP 2 Score: 27.7202 bits (60), Expect = 3.587e-48
Identity = 11/28 (39.29%), Postives = 21/28 (75.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTS 86
            KA+LQDIA++TG +  + ++GL + + +
Sbjct:  285 KAILQDIAVLTGGQVISEEVGLSLADAN 312          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.291e-47
Identity = 94/171 (54.97%), Postives = 124/171 (72.51%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R +TI K++TTI+A   +K EIQ RI Q++K+L ETDS YD EKL ERIAKL+GG+AVIKVGA  ETEL+DRKLRIE+A NAT AA+ E I PGGG  L++L+  V  IK   E+ +E++GADIV++AL AP   IA NA         +VKDS++  GYNA T ++E+++
Sbjct:  319 RTITIDKENTTIVAGTTTKPEIQKRIGQIRKQLEETDSEYDKEKLQERIAKLAGGIAVIKVGAVPETELKDRKLRIENALNATKAAVAESIGPGGGKTLIYLASKVDPIKAYFEE-EEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSDFNVGYNAATGEFEDLI 488          

HSP 2 Score: 30.8018 bits (68), Expect = 2.291e-47
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KALLQDIAI+T  +  + ++GL ++  S++
Sbjct:  284 KALLQDIAILTDGQLISEEIGLSLDTASID 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 3.240e-46
Identity = 92/175 (52.57%), Postives = 121/175 (69.14%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDE--IQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q  K T+ KD+T ++A A  +    ++ RI QL+KE A +DS YD EK+ ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+ L+  + + K +L + +ER+ ADI+ KAL AP   +A NA         KVK++    GYN +T K E+++
Sbjct:  317 QAVKATLEKDNTILVAGADKRASAGVKERIEQLRKEYAASDSDYDKEKIQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIRLAGKIESFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQGYNVITGKIEDLI 491          

HSP 2 Score: 33.8834 bits (76), Expect = 3.240e-46
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+LQDIAI+TG    + D+GL ++  S++Q
Sbjct:  284 KAVLQDIAILTGGSVISEDIGLSLDTVSLDQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.504e-46
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGVAVIKVGAATE EL+++K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA         KVK+ +   GY+A  D++ NM
Sbjct:  322 KVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALIRT---IKALDDIKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAARDRFVNM 488          

HSP 2 Score: 34.6538 bits (78), Expect = 5.504e-46
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG +F + + G+ +EN +++
Sbjct:  286 KAMLQDIAILTGGQFISEETGIKLENVTLD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.173e-46
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KV   KD TTII    +K +I+ARIAQ+KK+L ETDS +D EKL ER+AKL+GGVAVIKVGAATE EL+++K RIEDA +AT AA+EEGIVPGGG AL+     + A+ D K+++ DER+G +IV+++L  P  LIA+NA         KVK+ +   GY+A  D++ NM
Sbjct:  322 KVRANKDKTTIIGGKGNKKDIEARIAQIKKQLEETDSEFDREKLQERLAKLAGGVAVIKVGAATEVELKEKKHRIEDALSATKAAVEEGIVPGGGVALLRT---IKALDDVKVDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDGPMGYDAANDRFVNM 488          

HSP 2 Score: 34.6538 bits (78), Expect = 7.173e-46
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG +F + + G+ +EN +++
Sbjct:  286 KAMLQDIAILTGGQFISEETGIKLENVTLD 315          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SYNJA4.382e-5259.4160 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_ANASP5.711e-5259.6560 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH602_SYNJB2.802e-5159.4160 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_GLOVI6.739e-5056.7360 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_GLOVI1.243e-4857.3160 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNP63.587e-4855.5660 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH602_ANASL2.291e-4754.9760 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH602_SYNY33.240e-4652.5760 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH60_DICTD5.504e-4654.1260 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_DICT67.173e-4654.1260 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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