CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.587e-42
Identity = 82/172 (47.67%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKV-KDSEWTTGYNAMTDKYENML 622
            +KV I K++TTI++ A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGI+PGGG AL+  S+H+  I+ K  + D++ G +IV+KAL  PA  IA NA         K+ +  +++ GY++ T +Y N++
Sbjct:  321 KKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTK--NDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLV 490          

HSP 2 Score: 34.2686 bits (77), Expect = 7.587e-42
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIAI+TG +  + DLG+ +EN ++
Sbjct:  286 KAMLQDIAILTGGQAISEDLGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.588e-42
Identity = 88/169 (52.07%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA         ++K  +   GYNA TD++E+M
Sbjct:  320 KVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDM 485          

HSP 2 Score: 31.5722 bits (70), Expect = 7.588e-42
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA L+DIA +TG    + DLGL +++T +EQ
Sbjct:  284 KAQLEDIATLTGGTVISSDLGLDLKDTKLEQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.588e-42
Identity = 88/169 (52.07%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA         ++K  +   GYNA TD++E+M
Sbjct:  320 KVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDM 485          

HSP 2 Score: 31.5722 bits (70), Expect = 7.588e-42
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA L+DIA +TG    + DLGL +++T +EQ
Sbjct:  284 KAQLEDIATLTGGTVISSDLGLDLKDTKLEQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.588e-42
Identity = 88/169 (52.07%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA         ++K  +   GYNA TD++E+M
Sbjct:  320 KVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDM 485          

HSP 2 Score: 31.5722 bits (70), Expect = 7.588e-42
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA L+DIA +TG    + DLGL +++T +EQ
Sbjct:  284 KAQLEDIATLTGGTVISSDLGLDLKDTKLEQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 162.54 bits (410), Expect = 7.588e-42
Identity = 91/175 (52.00%), Postives = 124/175 (70.86%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD----KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R++ I KD+TTI+A+  ++  +++R  Q+++++ ETDS YD EKL ER+AKL+GGVAVIKVGAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+   P ++D     L+D +E  GA IV +AL AP   IA NA         +VK+ E+  GYNA + +Y +ML
Sbjct:  320 RRINITKDNTTIVAEG-NEAAVKSRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PQLEDWATGNLKD-EELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKEFNVGYNAASLEYVDML 489          

HSP 2 Score: 28.4906 bits (62), Expect = 7.588e-42
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            K +L+DIA +TG +  + D GL +E+ +V+
Sbjct:  285 KQMLEDIATLTGGQVISEDAGLKLESATVD 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACF3 (60 kDa chaperonin OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=groL PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.588e-42
Identity = 90/173 (52.02%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE---DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KVTI KD+TTI+  + +K+ I  R+ Q+KK +AET S +D EKL ER+AKL+GGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG ALV++   +PA+ D++E     DE  G  IV+ AL AP   IA NA         ++K  +   GYNA  DK+E+M+
Sbjct:  320 KVTITKDATTIVDGSGNKEAIAERVDQIKKAIAETTSDFDKEKLQERLAKLAGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALVNV---IPAL-DEVEASATGDEATGIKIVKAALEAPVRQIAENAGLEGSVIVNQLKQEKPGVGYNAADDKFEDMV 488          

HSP 2 Score: 30.8018 bits (68), Expect = 7.588e-42
Identity = 12/31 (38.71%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA L+DIA++TG    + DLG+ +++ +++Q
Sbjct:  284 KAQLEDIAVLTGGTVISDDLGMQLKDATIDQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.887e-42
Identity = 83/171 (48.54%), Postives = 116/171 (67.84%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +++ I KD+TTII  A  +  ++ R+ Q++ ++ ET S YD EKL ER+AKL GGVAVIKVGAATETE++++K R+EDA NAT AA+EEGIVPGGG A +     + A+K    + DE++G +IV+KAL  P  +IA NA         KVK+     G+NA T+ YE+M+
Sbjct:  321 KRIQIDKDNTTIIDGAGERAALEGRVKQIRAQIDETTSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALNATRAAVEEGIVPGGGVAYIRTLPILEALK---LEGDEQVGVNIVRKALEEPLKMIAANAGMEGTIVVEKVKEQSGAFGFNARTEVYEDMI 488          

HSP 2 Score: 33.4982 bits (75), Expect = 9.887e-42
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG    + D+G  +ENT +E
Sbjct:  286 KAMLEDIAILTGGTVISEDMGYKLENTRLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.887e-42
Identity = 84/172 (48.84%), Postives = 122/172 (70.93%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSE-WTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGIVPGGG AL+  S+ +  +  + E+ D++ G +IV+KAL  PA  IA NA         KV D+E ++ G++A T +Y N++
Sbjct:  321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGL--RTENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQYSFGFDAQTGEYSNLV 490          

HSP 2 Score: 34.2686 bits (77), Expect = 9.887e-42
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIAI+TG +  + DLG+ +EN ++
Sbjct:  286 KAMLQDIAILTGGQAISEDLGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_STAAR (60 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groL PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.888e-42
Identity = 86/170 (50.59%), Postives = 118/170 (69.41%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA         ++K++E   G+NA T+++ NML
Sbjct:  320 KVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNML 486          

HSP 2 Score: 32.3426 bits (72), Expect = 9.888e-42
Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+D+AI+TGA+    DLGL +++ +++
Sbjct:  284 KAMLEDLAILTGAQVITDDLGLDLKDATID 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.289e-41
Identity = 86/172 (50.00%), Postives = 123/172 (71.51%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            Q  KV + K+STTII++A +++ ++AR  Q++K++  TDS Y+ EKL ER+AKL+GG+AVIKVGAATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N          ++K+ +++ GY+A T K+ NM
Sbjct:  319 QANKVIVNKESTTIISNA-NENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNM 489          

HSP 2 Score: 27.335 bits (59), Expect = 1.289e-41
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            K++L+DIAI+TG +    D GL ++   +
Sbjct:  286 KSILEDIAILTGGQLITEDAGLSLDKVDL 314          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BRAJA7.587e-4247.6760 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH60_LACZE7.588e-4252.0760 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB7.588e-4252.0760 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC37.588e-4252.0760 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH601_SYNY37.588e-4252.0060 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_LACF37.588e-4252.0260 kDa chaperonin OS=Lactobacillus fermentum (stra... [more]
CH602_SYNAS9.887e-4248.5460 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH603_BRAJA9.887e-4248.8460 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH60_STAAR9.888e-4250.5960 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_GALSU1.289e-4150.0060 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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