CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_BACA2 (60 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groL PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.304e-41
Identity = 83/170 (48.82%), Postives = 118/170 (69.41%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + K++TTI+  A   ++I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + D + G +IV +AL  P   IAHNA         ++K+ +   G+NA T ++ NM+
Sbjct:  320 KVVVTKENTTIVEGAGDTEKIAARVNQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAAVE---AEGDAQTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEKIGVGFNAATGEWVNMI 486          

HSP 2 Score: 32.7278 bits (73), Expect = 6.304e-41
Identity = 14/31 (45.16%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+L+DI+++TG E    DLGL +++T + Q
Sbjct:  284 KAMLEDISVLTGGEVITEDLGLDLKSTEIGQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_BACP2 (60 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groL PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.304e-41
Identity = 83/170 (48.82%), Postives = 117/170 (68.82%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + K++TTI+  +    +I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V +I+    D D + G +IV ++L  P   IAHNA         ++K+ E   G+NA T+++ NM+
Sbjct:  320 KVVVTKENTTIVEGSGDSAQIAARVNQIRAQVEETTSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYKKVASIE---ADGDVQTGVNIVLRSLEEPIRQIAHNAGLEGSVIVERLKNEEIGVGFNAATNEWVNMI 486          

HSP 2 Score: 33.113 bits (74), Expect = 6.304e-41
Identity = 14/31 (45.16%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+L+DI+++TG E    DLGL +++T + Q
Sbjct:  284 KAMLEDISVLTGGELITEDLGLDLKSTEIGQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.304e-41
Identity = 82/172 (47.67%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSE-WTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  K +I+AR+AQ+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGI+PGGG AL+  S+ +  ++ K E  D++ G +IV+KAL APA  IA NA         K+ + E +  G+++ +  Y NM+
Sbjct:  321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGVRTKNE--DQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYAYGFDSQSGDYVNMV 490          

HSP 2 Score: 34.2686 bits (77), Expect = 6.304e-41
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIAI+TG +  + DLG+ +EN ++
Sbjct:  286 KAMLQDIAILTGGQAISEDLGIKLENVNL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.304e-41
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXK-VKDSEWTTGYNAMTDKYENM 619
            Q +KV I KD+TTI+  A SK++IQARI Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGIV GGG AL++ +  +    DKL   + D++ G DIV+KAL AP   IA NA         K ++  E   G+NA   +Y +M
Sbjct:  319 QAKKVVITKDNTTIVDGAGSKEDIQARIVQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVAGGGVALLYATKAL----DKLTAVNEDQKFGIDIVRKALQAPVRQIAQNAGFDGSVIVGKLLEKGETNFGFNAQAGEYGDM 489          

HSP 2 Score: 35.8094 bits (81), Expect = 6.304e-41
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+D+AI+TG +  + DLG+ +EN S+E
Sbjct:  286 KAMLEDMAILTGGQVVSEDLGIKLENVSLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.211e-41
Identity = 92/171 (53.80%), Postives = 122/171 (71.35%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R+VTI K++TTI+A    +  +  R+A +K+EL  TDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEGIVPGGG  L+ L+D +  + ++LE  D+R G +I+Q+ALVAP   IA NA          +++S    G+NA+T  YE+++
Sbjct:  319 RRVTISKENTTIVATDDHRAAVADRVAAIKRELDATDSDYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVPGGGTTLLQLADGLNGLVEQLE-GDQRTGVEILQRALVAPVHHIATNAGHNGDVVIEAMRNS--GQGFNALTGTYEDLM 486          

HSP 2 Score: 23.0978 bits (48), Expect = 8.211e-41
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA L DIAI+TG    + D  L ++   +
Sbjct:  284 KAALADIAILTGGTLISEDRALTLDKVQL 312          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.213e-41
Identity = 83/172 (48.26%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTT-GYNAMTDKYENML 622
            ++V+I KD+TTI+     K EI+AR++Q++K++ +T S YD EKL ER+AKL+GGVAVIKVG ATE E+++RK R++DA NAT AA+EEGIVPGGG AL+  S ++  +   L D DE+ G DIV+KAL AP   IA NA          + +++  + G+NA T++Y +++
Sbjct:  321 KRVSIDKDNTTIVDGGGKKKEIEARVSQIRKQIDDTSSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVV--GLND-DEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLV 489          

HSP 2 Score: 35.039 bits (79), Expect = 8.213e-41
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQD+A++TG +  + DLG+ +EN  +E
Sbjct:  286 KAMLQDLAVLTGGQVISEDLGIKLENVGME 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.213e-41
Identity = 81/171 (47.37%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTI+  A   D+I+AR+ Q++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA NAT AA+EEGIVPGGG ALV ++  +  IK    D DE  G +I+++A+  P   IA NA         +V++ +   G+NA T +YE+++
Sbjct:  321 KRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKP--ADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDGFGFNAATGEYEDLI 489          

HSP 2 Score: 35.8094 bits (81), Expect = 8.213e-41
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIA++TG +  + D+G+ +EN SV
Sbjct:  286 KAMLQDIAVLTGGQVVSEDMGIKLENISV 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.213e-41
Identity = 81/171 (47.37%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTI+  A   D+I+AR+ Q++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA NAT AA+EEGIVPGGG ALV ++  +  IK    D DE  G +I+++A+  P   IA NA         +V++ +   G+NA T +YE+++
Sbjct:  321 KRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKP--ADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDGFGFNAATGEYEDLI 489          

HSP 2 Score: 35.8094 bits (81), Expect = 8.213e-41
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIA++TG +  + D+G+ +EN SV
Sbjct:  286 KAMLQDIAVLTGGQVVSEDMGIKLENISV 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.214e-41
Identity = 82/172 (47.67%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSE-WTTGYNAMTDKYENML 622
            +KV I K++TTI++ A  K +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGIVPGGG AL+  S+ +  I  K  + D++ G +IV+KAL APA  IA NA         K+ + E ++ G+++ T +Y N++
Sbjct:  321 KKVMIDKENTTIVSGAGKKADIEARVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRI--KTANDDQKTGVEIVRKALSAPARQIAINAGEDGSIIVGKILEKEQYSYGFDSQTGEYVNLI 490          

HSP 2 Score: 34.2686 bits (77), Expect = 8.214e-41
Identity = 15/29 (51.72%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+LQDIAI+TG +  + DLG+ +EN ++
Sbjct:  286 KAMLQDIAILTGGQAISEDLGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_THEFY (60 kDa chaperonin 2 OS=Thermobifida fusca (strain YX) GN=groL2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.215e-41
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R++T+ KD+TTI+  A  + E+  RI Q++KE+  TDS +D EKL ER+AKL+GGV V++VGAATE EL++RK R+EDA +AT AA+EEGI+ GGG+ALVH +  +    D     DE  G  IV++ALVAPA  IA+NA         ++ + E   GYNA T +Y +++
Sbjct:  319 RRITVTKDTTTIVDGAGDQSEVNDRINQIRKEIEATDSDWDREKLQERLAKLAGGVCVLRVGAATEVELKERKHRLEDAISATRAAVEEGIIAGGGSALVHAAKTLEG--DLGRTGDEATGVAIVRRALVAPARWIANNAGAEGNVVVSRIAELEPGHGYNAATGEYGDLV 487          

HSP 2 Score: 34.6538 bits (78), Expect = 8.215e-41
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG +  A ++GL +EN  ++
Sbjct:  284 KAMLQDIAILTGGQVIAEEVGLTLENAELD 313          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACA26.304e-4148.8260 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH60_BACP26.304e-4148.8260 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH602_BRASO6.304e-4147.6760 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH60_RHOCS6.304e-4149.7160 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH602_SYNPX8.211e-4153.8060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH60_HYPNA8.213e-4148.2660 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_DESVV8.213e-4147.3760 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH8.213e-4147.3760 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH601_NITHX8.214e-4147.6760 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH602_THEFY8.215e-4147.9560 kDa chaperonin 2 OS=Thermobifida fusca (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
back to top