CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.769e-38
Identity = 80/172 (46.51%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKV-KDSEWTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  K +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K R+EDA NAT AA++EGIVPGGG AL+     V  I +   ++D + G +IV KAL AP   IA NA         K+ ++   T G++A ++ Y +M+
Sbjct:  321 KKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRITN--PNSDVQAGINIVLKALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMV 490          

HSP 2 Score: 35.4242 bits (80), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG +  + DLG+ +EN +++
Sbjct:  286 KAMLEDIAILTGGQLISDDLGMKLENVTIK 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.769e-38
Identity = 79/171 (46.20%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I KD+TTII     + +I AR++Q+K+++ E+ S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+VPGGG ALV ++  +  +  ++ + D++ G  I  +A+ AP   IA NA          VK+     GYNA  D Y +ML
Sbjct:  321 KRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAEV--EVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNFGYNAGNDTYGDML 489          

HSP 2 Score: 31.9574 bits (71), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQD+AI+TG    A ++GL +E  ++E
Sbjct:  286 KAMLQDVAILTGGTVIAEEIGLELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.769e-38
Identity = 78/171 (45.61%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +++T+ KD+TTII     + +IQ R+ Q++ ++ ET S YD EKL ER+AKL GGVAVIKVGAATETE++++K R+EDA +AT AA++EGIVPGGG A +     + A+    E   ++ G ++++++L  P   IA NA         KVK+S+   GYNA  D+Y +ML
Sbjct:  321 KRITVDKDNTTIIDGDGKEADIQGRVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIKVGAATETEMKEKKARVEDALHATRAAVDEGIVPGGGVAYLRALASLDALSLPTE---QQFGVNVIKRSLEEPIRQIAQNAGVDGSIVVDKVKNSKDAFGYNAAEDEYVDML 488          

HSP 2 Score: 31.9574 bits (71), Expect = 2.769e-38
Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG +  + ++G  +ENT+++
Sbjct:  286 KAMLEDIAILTGGQVISEEIGNKLENTTMD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.769e-38
Identity = 78/173 (45.09%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V + K++TTII  A     IQAR+ +++K++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+VPGGG AL+     +  +  K ++A++  G  IV +A+ AP   I  NA         KV + +   GYNA + +Y +ML
Sbjct:  319 QAKRVEVGKENTTIIDGAGEAATIQARVGEIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALLRARATLENL--KTDNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGNFGYNAASGEYGDML 489          

HSP 2 Score: 33.113 bits (74), Expect = 2.769e-38
Identity = 14/31 (45.16%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA+L DIA++TG E  A ++GL +E  +++Q
Sbjct:  286 KAMLTDIAVLTGGEVIAEEVGLTLEKATLDQ 316          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.769e-38
Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V + K++TTII  A    +I+AR+ Q++ ++ ET S YD EKL ER+AKL+GGVAVIKVGA TE E++++K R+EDA +AT AA+EEG+VPGGG ALV     + AI D K ++ D+ +G  ++++A+ AP   I  NA         KVK      GYNA T +Y +M+
Sbjct:  321 KRVILSKENTTIIDGAGVDADIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRA---LAAIVDLKGDNEDQNVGIALLRRAVEAPLRQITANAGDEPSVVADKVKQGSGNYGYNAATGEYGDMI 489          

HSP 2 Score: 34.6538 bits (78), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA++TG +  + ++GL +E T++E
Sbjct:  286 KAMLQDIAVLTGGQVISEEIGLTLETTTLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_COREQ (60 kDa chaperonin OS=Corynebacterium equii GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.769e-38
Identity = 85/171 (49.71%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            RKV + KD TTI+  A   D I  R+ Q++ E+  +DS YD EKL ER+AKL+GGVAVIK GAATE EL++RK RIEDA     AA+EEGIV GGG AL+  S   P + D   + DE  GA+IV+ AL AP   IA NA         KV++    +G NA T +YE++L
Sbjct:  319 RKVVVTKDETTIVEGAGDADAIAGRVNQIRAEIEASDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLQSS---PVLDDLKLEGDEATGANIVKVALEAPLKQIAFNAGLEPGVVAEKVRNLPAGSGLNAATGEYEDLL 486          

HSP 2 Score: 30.4166 bits (67), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA L DIAI+TG E  + ++GL +E   +E
Sbjct:  284 KAQLADIAILTGGEVVSEEVGLSLETAGIE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_RENSM (60 kDa chaperonin 1 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groL1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.769e-38
Identity = 85/173 (49.13%), Postives = 108/173 (62.43%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q RKV + KD TTI+  A   ++I  R+AQ++ E+  TDS YD EKL ER+AKL+GGVAVIK G+ATE EL++RK RIEDA     AA+EEGIVPGGG AL+     V A +    + DE  GA+IV+ A+ AP   IA NA         KV+      G NA T  YE++L
Sbjct:  317 QARKVVVTKDETTIVEGAGDAEQIAGRVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKAGSATEVELKERKHRIEDAVRNAKAAVEEGIVPGGGVALIQAG--VKAFETLQLEGDEATGANIVKVAIDAPLKQIAINAGLEPGVVVDKVRGLPVGHGLNAATGVYEDLL 487          

HSP 2 Score: 30.8018 bits (68), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA L DIAI+TG +  + ++GL +EN +V+
Sbjct:  284 KAQLADIAILTGGQVISEEVGLSLENATVD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.769e-38
Identity = 77/172 (44.77%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXK-VKDSEWTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  K +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E+++RK R++DA +AT AA+EEGI+PGGG AL+     + A+K   ++ D++ G DIV++A+  PA  I  NA         K ++ + +  G+NA T +Y++++
Sbjct:  321 KKVVIDKENTTIVDGAGRKKDIEARVTQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRALKALDAVKP--DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLV 490          

HSP 2 Score: 31.9574 bits (71), Expect = 2.769e-38
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG    + DLG+ +EN ++
Sbjct:  286 KAMLEDIAILTGGTAISEDLGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.769e-38
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  116 VTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENM 619
            V ++KD T II    + +EI+ RIAQ+K ++ +T S Y+ E L ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEGIVPGGG  L+     V  +  +L D DE++GA IV KAL AP   IA NA         K+  S E + G++A+  +Y +M
Sbjct:  321 VRVKKDDTIIIGGKGNPEEIKKRIAQIKSQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKEL-DGDEKVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDM 488          

HSP 2 Score: 32.7278 bits (73), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + +LG+ +E+ ++E
Sbjct:  284 KAMLQDIAILTGGTVISDELGINLEDVAIE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.769e-38
Identity = 83/169 (49.11%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  116 VTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKV-KDSEWTTGYNAMTDKYENM 619
            V ++KD T II      + I+ RIAQ+K ++ ET S Y+ E L ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEGIVPGGG  L+     V  + ++LE  DE++GA IV KAL AP   IA NA         K+  + +   G++A+  +Y NM
Sbjct:  321 VRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELE-GDEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNM 488          

HSP 2 Score: 33.113 bits (74), Expect = 2.769e-38
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG +  + +LG+ +E+ ++E
Sbjct:  284 KAMLQDIAILTGGQVASEELGINLEDLTLE 313          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BRASB2.769e-3846.5160 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_SHEB52.769e-3846.2060 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_GEOSL2.769e-3845.6160 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH602_CHRVO2.769e-3845.0960 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH60_PSEPW2.769e-3845.9360 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_COREQ2.769e-3849.7160 kDa chaperonin OS=Corynebacterium equii GN=groL... [more]
CH601_RENSM2.769e-3849.1360 kDa chaperonin 1 OS=Renibacterium salmoninarum ... [more]
CH601_NITWN2.769e-3844.7760 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_THELT2.769e-3849.7060 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_THESQ2.769e-3849.1160 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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