CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_CLOTE (60 kDa chaperonin OS=Clostridium tetani GN=groL PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.699e-38
Identity = 87/169 (51.48%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  116 VTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            V I K++TTI+    +K EI+ R+ Q+K ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA  AT AA+EEGI+PGGG A   +   V  +    E  D +LG DIV+K+L  P   IA NA         KVK SE   GY+A+ ++Y NM+
Sbjct:  323 VKITKETTTIVNGKGNKKEIEDRVNQIKAQIEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALAATKAAVEEGIIPGGGTAYAMVIKEVEKLNS--ETHDIKLGIDIVKKSLEEPVRQIACNAGVEGSIVIEKVKHSEAGIGYDALNNEYVNMI 489          

HSP 2 Score: 23.483 bits (49), Expect = 4.699e-38
Identity = 9/30 (30.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            K +L+DIA +TG +  + ++G  +++ +V+
Sbjct:  286 KEMLEDIATLTGGQVISEEIGRDLKDVTVD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_RHOSR (60 kDa chaperonin 1 OS=Rhodococcus sp. (strain RHA1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.699e-38
Identity = 86/173 (49.71%), Postives = 109/173 (63.01%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q RKV I KD TTI+  A   + I  R+AQ++ E+  +DS YD EKL ER+AKL+GGVAVIK GAATE EL++RK RIEDA     AA+EEGIV GGG AL+      PA+ D   + DE  GA+IV+ AL AP   IA NA         KV++     G NA T++Y ++L
Sbjct:  317 QARKVVITKDETTIVEGAGDPEAIAGRVAQIRAEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALL---QSAPALDDLKLEGDEATGANIVRVALEAPLKQIAFNAGLEPGVVAEKVRNLPAGHGLNASTNEYGDLL 486          

HSP 2 Score: 29.261 bits (64), Expect = 4.699e-38
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA L DIAI+TG E  + ++GL +E   +E
Sbjct:  284 KAQLADIAILTGGEVISEEVGLSLETAGLE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_NOCFA (60 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.699e-38
Identity = 85/173 (49.13%), Postives = 110/173 (63.58%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q RKV + KD TTI+  A   + I+ R+AQ++ E+  +DS YD EKL ER+AKL+GGVAVIK GAATE EL++RK RIEDA     AA+EEGIV GGG AL+  +   PA+ +     DE  GA+IV+ AL AP   IA NA         KV + E   G NA + +YE++L
Sbjct:  317 QARKVVVTKDETTIVEGAGDAEAIKGRVAQIRTEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLQAA---PALDELKLTGDEATGANIVRVALSAPLKQIAFNAGLEPGVVAEKVSNLEAGHGLNADSGEYEDLL 486          

HSP 2 Score: 30.0314 bits (66), Expect = 4.699e-38
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA L DIAI+TG E  + ++GL +E   +E
Sbjct:  284 KAQLADIAILTGGEVISEEVGLSLETAGIE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_RHILO (60 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.699e-38
Identity = 82/172 (47.67%), Postives = 112/172 (65.12%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENML 622
            ++V I KD+TTII  A +K  IQAR+AQ+K ++ ET S YD EKL ER+AKLSGGVAVI+VG  TE+E++++K RI+DA NAT AA+EEGIVPGGG AL+     +  +     +AD   G  IV +AL AP   IA N+         K+ DS +   G++A  + Y +M+
Sbjct:  321 KRVLIEKDTTTIIDGAGTKATIQARVAQIKGQIEETTSDYDKEKLQERLAKLSGGVAVIRVGGVTESEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRARSALSGLNG--ANADVTAGISIVLRALEAPIRQIAENSGVEGSIVVGKLADSKDHNLGFDAQNETYVDMI 490          

HSP 2 Score: 33.8834 bits (76), Expect = 4.699e-38
Identity = 13/30 (43.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIA++T  +  + DLG+ +EN ++E
Sbjct:  286 KAMLEDIAVLTAGQMISEDLGIKLENVTIE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_KLEOR (60 kDa chaperonin (Fragment) OS=Klebsiella ornithinolytica GN=groL PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.700e-38
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R++DA +AT AA+EEG+V GGG ALV ++  +  +    ++ D+ +G  +  +A+ AP   I  NA          VK  E   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEGAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGL--TAQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGEGNYGYNAATEEYGNMI 489          

HSP 2 Score: 28.4906 bits (62), Expect = 4.700e-38
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_KLEP7 (60 kDa chaperonin OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=groL PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.121e-38
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R++DA +AT AA+EEG+V GGG ALV ++  +  +  + E  D+ +G  +  +A+ AP   I  NA          VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLTGQNE--DQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAATEEYGNMI 489          

HSP 2 Score: 28.4906 bits (62), Expect = 6.121e-38
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_KLEP3 (60 kDa chaperonin OS=Klebsiella pneumoniae (strain 342) GN=groL PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.121e-38
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R++DA +AT AA+EEG+V GGG ALV ++  +  +  + E  D+ +G  +  +A+ AP   I  NA          VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLTGQNE--DQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAATEEYGNMI 489          

HSP 2 Score: 28.4906 bits (62), Expect = 6.121e-38
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.121e-38
Identity = 78/172 (45.35%), Postives = 117/172 (68.02%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENML 622
            +KV I K++TTI+  A + D+I+ R  Q++ ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E+++RK R++DA +AT AA+EEGIVPGGG AL   S  +  +     + D+R+GA+I++KAL AP   IAHNA         KV +S ++  G++A    Y++++
Sbjct:  321 KKVRIEKENTTIVEGAGASDDIKGRCGQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASTALGNL--HFHNDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLV 490          

HSP 2 Score: 31.187 bits (69), Expect = 6.121e-38
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG +  + DLG+ +E  ++
Sbjct:  286 KAMLEDIAILTGGQVISEDLGIKLETVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.121e-38
Identity = 79/171 (46.20%), Postives = 115/171 (67.25%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTI+  A   ++I+AR+ Q++ ++ ET S YD EKL ER+AKL GGVAVI VGAATETE++++K R+EDA NAT AA+EEGIVPGGG A V     +  IK    D DE  G +I++++L  P   IA NA         KV++++   G+NA + +YE+++
Sbjct:  321 KRVVIDKENTTIVDGAGKSEDIKARVKQIRAQIEETSSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTAFVRSIKVLDDIKP--ADDDELAGLNIIRRSLEEPLRQIAANAGYEGSIVVEKVREAKDGFGFNAASGEYEDLI 489          

HSP 2 Score: 31.9574 bits (71), Expect = 6.121e-38
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG E    D G+ +EN S+
Sbjct:  286 KAMLEDIAILTGGEAIFEDRGIKLENVSL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_ALCBS (60 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.121e-38
Identity = 75/171 (43.86%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  + +I  R+ Q++KE+  + S YD EKL ER+AKL+GGVAVIK+GAATE E++++K R++DA +AT AA+EEG+VPGGG ALV    +V  IK   ++ ++  G  +  +AL  P   IA+NA         +V++ +   GYNA + +Y +ML
Sbjct:  320 KKVNIDKENTTIVDGAGQQADIDGRVEQIRKEIENSSSDYDKEKLQERVAKLAGGVAVIKIGAATEIEMKEKKARVDDALHATRAAVEEGVVPGGGVALVRALANVGTIKG--DNDEQNAGIALTFRALEMPLRQIAYNAGAEASVIVQEVRNGKGNYGYNAASGEYGDML 488          

HSP 2 Score: 34.6538 bits (78), Expect = 6.121e-38
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++GL +EN S+E
Sbjct:  285 KAMLQDIAILTGGTVISEEVGLSLENASLE 314          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOTE4.699e-3851.4860 kDa chaperonin OS=Clostridium tetani GN=groL PE... [more]
CH601_RHOSR4.699e-3849.7160 kDa chaperonin 1 OS=Rhodococcus sp. (strain RHA... [more]
CH602_NOCFA4.699e-3849.1360 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2... [more]
CH601_RHILO4.699e-3847.6760 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=... [more]
CH60_KLEOR4.700e-3845.0960 kDa chaperonin (Fragment) OS=Klebsiella ornithi... [more]
CH60_KLEP76.121e-3845.0960 kDa chaperonin OS=Klebsiella pneumoniae subsp. ... [more]
CH60_KLEP36.121e-3845.0960 kDa chaperonin OS=Klebsiella pneumoniae (strain... [more]
CH601_GLUDA6.121e-3845.3560 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH60_LAWIP6.121e-3846.2060 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH60_ALCBS6.121e-3843.8660 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
back to top