CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_ENTS8 (60 kDa chaperonin OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=groL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.975e-38
Identity = 77/173 (44.51%), Postives = 111/173 (64.16%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+ Q+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG ALV ++  +  +  + E  D+ +G  +  +A+ AP   I  NA          VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGDESAIQGRVGQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAKLTELTGQNE--DQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAATEEYGNMI 489          

HSP 2 Score: 30.4166 bits (67), Expect = 7.975e-38
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIAILTGGTVISEEIGMELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 7.975e-38
Identity = 76/171 (44.44%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTII  A  + +I+AR+ Q++K++ ET S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+VPGGG ALV     +  +K   ++ ++ +G  ++++A+ +P   I  NA         KVK      G+NA T  Y +M+
Sbjct:  321 KRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGNYGFNAATGVYGDMI 489          

HSP 2 Score: 31.187 bits (69), Expect = 7.975e-38
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++GL +E  ++E
Sbjct:  286 KAMLQDIAILTGGTVISEEVGLSLEGATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.975e-38
Identity = 76/171 (44.44%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTII  A  + +I+AR+ Q++K++ ET S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+VPGGG ALV     +  +K   ++ ++ +G  ++++A+ +P   I  NA         KVK      G+NA T  Y +M+
Sbjct:  321 KRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGNYGFNAATGVYGDMI 489          

HSP 2 Score: 31.187 bits (69), Expect = 7.975e-38
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++GL +E  ++E
Sbjct:  286 KAMLQDIAILTGGTVISEEVGLSLEGATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.975e-38
Identity = 76/171 (44.44%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V I K++TTII  A  + +I+AR+ Q++K++ ET S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+VPGGG ALV     +  +K   ++ ++ +G  ++++A+ +P   I  NA         KVK      G+NA T  Y +M+
Sbjct:  321 KRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGNYGFNAATGVYGDMI 489          

HSP 2 Score: 31.187 bits (69), Expect = 7.975e-38
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++GL +E  ++E
Sbjct:  286 KAMLQDIAILTGGTVISEEVGLSLEGATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_BEII9 (60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.975e-38
Identity = 76/173 (43.93%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENML 622
            +++ I K++TTII  A +KD+I+ RI+Q+K ++AET S YD EK+ ER+AKL+GGVAV++VG +TE E++++K R++DA NAT AA+EEG+ PGGG AL+     + A+++   +++D++ G +IV+KA+  PA  I  N+         K+ +S E+  GYNA T +Y +M+
Sbjct:  321 KRIRIDKEATTIIDGAGNKDDIEGRISQIKAQIAETTSDYDREKMQERLAKLAGGVAVLRVGGSTEVEVKEKKDRVDDALNATRAAVEEGVSPGGGVALLRA---IKALENLPTDNSDQKAGIEIVRKAIQTPAKQIVDNSGGDGAVVVGKLLESNEYAFGYNAQTGEYGDMV 490          

HSP 2 Score: 31.187 bits (69), Expect = 7.975e-38
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG    + +LG+ +EN ++
Sbjct:  286 KAMLEDIAILTGGTLISEELGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.975e-38
Identity = 79/172 (45.93%), Postives = 119/172 (69.19%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENML 622
            +KV I K++TTI+  A  K +I  R  Q++ ++ ET S YD EKL ER+AKL+GGVAVI+VG A+ETE+++RK R++DA +AT AA+EEGIVPGGG AL   S  +   K K ++ D+R G DI++KA++AP   IA NA         KV D+ +++ G++A + ++++M+
Sbjct:  321 KKVLIEKENTTIVEGAGKKADITGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGASETEVKERKDRVDDALHATRAAVEEGIVPGGGVALARAS--LAINKLKADNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMV 490          

HSP 2 Score: 31.187 bits (69), Expect = 7.975e-38
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG +  + DLG+ +E  ++
Sbjct:  286 KAMLEDIAILTGGQVISEDLGIKLETVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.975e-38
Identity = 82/173 (47.40%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS--EWTTGYNAMTDKYENML 622
            ++V I K++TTII     K +I+AR+ Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VG ATE E++++K R++DA NAT AA+EEGIVPGGG AL+     V  +K  + D   + G  IV KAL AP   IA NA         K+ D+    T G+NA T++Y +M+
Sbjct:  321 KRVRIEKENTTIIDGLGEKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTALLRAKKAVAELKSDVPDV--QAGIKIVLKALEAPIRQIAQNAGVEGSIVVGKITDNTGSETYGFNAQTEEYVDMI 491          

HSP 2 Score: 30.0314 bits (66), Expect = 7.975e-38
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+T  +  + DLG+ +EN ++
Sbjct:  286 KAMLEDIAILTKGQTISEDLGIKLENVAL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 7.976e-38
Identity = 81/173 (46.82%), Postives = 125/173 (72.25%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA--DERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKD-SEWTTGYNAMTDKYENM 619
            +KV+I K++TTI+  + +K +I+ R+AQ++ ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E++++K R++DA +AT AA+EEGI+PGGG AL+     V A+ D +E A  D+R+G DIV++A+ APA  IA NA         K+++ SE++ G+NA T +Y ++
Sbjct:  321 KKVSIEKENTTIVDGSGAKSDIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRA---VKAL-DNVETANGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDL 489          

HSP 2 Score: 28.8758 bits (63), Expect = 7.976e-38
Identity = 12/30 (40.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+T     + DLG+ +E+ +++
Sbjct:  286 KAMLEDIAILTAGTVISEDLGIKLESVTLD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.976e-38
Identity = 79/171 (46.20%), Postives = 119/171 (69.59%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKD-SEWTTGYNAMTDKYENM 619
            +KV I K++TTII  A SK E+  R AQ++ ++ ET S YD EKL ER+AKL+GGVAVI+VG +TE E++++K R++DA +AT AA+EEGI+PGGG AL+     + +I  K  + D+R+G DIV++A+ AP   IA NA         K+++ S+++ G+NA T +Y ++
Sbjct:  321 KKVAIEKENTTIIDGAGSKAELDGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSI--KTANDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDL 489          

HSP 2 Score: 30.0314 bits (66), Expect = 7.976e-38
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+T     + DLG+ +EN ++
Sbjct:  286 KAMLEDIAILTAGTVISEDLGIKLENVTL 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PANAN (60 kDa chaperonin (Fragment) OS=Pantoea ananas GN=groL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.976e-38
Identity = 75/173 (43.35%), Postives = 112/173 (64.74%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+ Q+++++ E  S YD EKL ER+AKL+GGVAV+KVGAATE E++++K R+EDA +AT AA+EEG+V GGG ALV ++  +  ++ + E  D+ +G  +  +A+ +P   I  NA          VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEETTIQGRVTQIRQQIEEATSDYDKEKLQERVAKLAGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAQLTELRGQNE--DQNVGIKVALRAMESPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAQTEEYGNMI 489          

HSP 2 Score: 30.4166 bits (67), Expect = 7.976e-38
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIAILTGGTVISEEIGMELEKAALE 315          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ENTS87.975e-3844.5160 kDa chaperonin OS=Enterobacter sakazakii (strai... [more]
CH60_PSEAE7.975e-3844.4460 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB7.975e-3844.4460 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA87.975e-3844.4460 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_BEII97.975e-3843.9360 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]
CH60_ACICJ7.975e-3845.9360 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH60_METPB7.975e-3847.4060 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH603_RHIL37.976e-3846.8260 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH602_RHIEC7.976e-3846.2060 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH60_PANAN7.976e-3843.3560 kDa chaperonin (Fragment) OS=Pantoea ananas GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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