CK740108 | Citrus Genome Database

Overview


Name	CK740108
Unique Name	CK740108
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	623

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALPC (60 kDa chaperonin OS=Salmonella paratyphi C (strain RKS4594) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALPB (60 kDa chaperonin OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALPA (60 kDa chaperonin OS=Salmonella paratyphi A GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALHS (60 kDa chaperonin OS=Salmonella heidelberg (strain SL476) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALG2 (60 kDa chaperonin OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGGEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALEP (60 kDa chaperonin OS=Salmonella enteritidis PT4 (strain P125109) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALDC (60 kDa chaperonin OS=Salmonella dublin (strain CT_02021853) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALCH (60 kDa chaperonin OS=Salmonella choleraesuis GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALAR (60 kDa chaperonin OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_SALA4 (60 kDa chaperonin OS=Salmonella agona (strain SL483) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.039e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2

Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ+++++ E  S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ ++  +  +K + E  D+ +G  +  +A+ AP   I  N           VK  +   GYNA T++Y NM+
Sbjct:  319 QAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNE--DQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 489

HSP 2 Score: 28.4906 bits (62), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3

Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  286 KAMLQDIATLTGGTVISEEIGMELEKATLE 315

The following BLAST results are available for this feature:

BLAST of CK740108 vs. ExPASy Swiss-Prot

BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_SALPC	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella paratyphi C (strai...	[more]
CH60_SALPB	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella paratyphi B (strai...	[more]
CH60_SALPA	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella paratyphi A GN=gro...	[more]
CH60_SALHS	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella heidelberg (strain...	[more]
CH60_SALG2	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella gallinarum (strain...	[more]
CH60_SALEP	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella enteritidis PT4 (s...	[more]
CH60_SALDC	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella dublin (strain CT_...	[more]
CH60_SALCH	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella choleraesuis GN=gr...	[more]
CH60_SALAR	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella arizonae (strain A...	[more]
CH60_SALA4	1.039e-37	44.51	60 kDa chaperonin OS=Salmonella agona (strain SL48...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC