CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PORGI (60 kDa chaperonin OS=Porphyromonas gingivalis GN=groL PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.039e-37
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KVT+ KD+TTI+  A +K+ I +RI Q+K ++  T S YD EKL ER+AKL+GGVAV+ VGAA+E E++++K R+EDA +AT AAIEEG VPGGG A +     +  +K   E+ DE  G +IV++A+  P   I  NA         KVK+ +   GYNA TD +EN+
Sbjct:  322 KVTVDKDNTTIVNGAGNKEGIASRITQIKAQIENTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVEDALSATRAAIEEGTVPGGGTAYIRAIAALEGLKG--ENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKVKEGKDDFGYNARTDVFENL 488          

HSP 2 Score: 30.4166 bits (67), Expect = 1.039e-37
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG    + + GL +EN +++
Sbjct:  286 KAMLEDIAILTGGTVISEETGLKLENATMD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PORG3 (60 kDa chaperonin OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.039e-37
Identity = 80/169 (47.34%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            KVT+ KD+TTI+  A +K+ I +RI Q+K ++  T S YD EKL ER+AKL+GGVAV+ VGAA+E E++++K R+EDA +AT AAIEEG VPGGG A +     +  +K   E+ DE  G +IV++A+  P   I  NA         KVK+ +   GYNA TD +EN+
Sbjct:  322 KVTVDKDNTTIVNGAGNKEGIASRITQIKAQIENTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVEDALSATRAAIEEGTVPGGGTAYIRAIAALEGLKG--ENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKVKEGKDDFGYNARTDVFENL 488          

HSP 2 Score: 30.4166 bits (67), Expect = 1.039e-37
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG    + + GL +EN +++
Sbjct:  286 KAMLEDIAILTGGTVISEETGLKLENATMD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.039e-37
Identity = 80/173 (46.24%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTT-GYNAMTDKYENML 622
            +++ I KD+TTII  A  + +I+ R+ +++  + ++ S YD EKL ER+AKL+GGVAVI VGAATE E++++K R+EDA +AT AA+EEGIVPGGG AL+  + HV  +KD K+ + DE++G DIV++A+  P  +I  NA         K++ ++ T+ GYNA+TD YE+++
Sbjct:  321 KRIVIDKDNTTIIDGAGEQKDIEGRVREIRGAIDKSTSDYDREKLQERLAKLAGGVAVINVGAATEAEMKEKKARVEDALHATRAAVEEGIVPGGGVALIR-AQHV--LKDVKVAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLV 490          

HSP 2 Score: 25.7942 bits (55), Expect = 1.039e-37
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIEN 80
            KA+LQDIA +T  +  + ++G  +EN
Sbjct:  286 KAMLQDIATLTKGQVISDEVGFKLEN 311          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_OENOB (60 kDa chaperonin OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.039e-37
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q  +VTI KD TTI+     K  +  RI  +++E+  T S +D EKL ER+AKL+GGVAV++VGAATETEL+++K RIEDA NAT AA+EEG V GGG A V++   V  + D L+  D   GA IV +AL  P   I  NA         + K  +   G+NA T ++ NM+
Sbjct:  317 QANRVTITKDKTTIVEGKGDKTALADRIKSIRQEIDSTTSDFDREKLQERLAKLAGGVAVVRVGAATETELKEKKYRIEDALNATRAAVEEGFVAGGGTAFVNIIPEVKKVADSLQ-GDVATGARIVLRALEEPLRQIVENAGLEGSVIAQRAKSEKPEVGFNAATGEWVNMI 488          

HSP 2 Score: 34.2686 bits (77), Expect = 1.039e-37
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA LQDIAI+TGA     DLGL +++ +++Q
Sbjct:  284 KAQLQDIAILTGATVVTEDLGLQLKDVTIDQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_THETN (60 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groL PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.039e-37
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDS-EWTTGYNAMTDKYENML 622
            R+V + K+ TTI+  A + ++I+ RI Q+K ++ ET S YD EKL ER+AKL+GGVAVI+VGAATETEL+++K RIEDA  AT AA+EEGIVPGGG AL+++ + V  + D LE  D + GA IV KAL AP   IA NA         K+K + +   GY+A  +++ +M+
Sbjct:  319 RQVKVTKEHTTIVGGAGNPEDIKKRINQIKAQIEETTSDYDREKLQERLAKLAGGVAVIQVGAATETELKEKKHRIEDALAATKAAVEEGIVPGGGVALLNVIEDVQKVVDSLE-GDFKTGAKIVLKALEAPVRQIAENAGVDGSIIVEKIKAAKDPNFGYDAYREEFTDMI 489          

HSP 2 Score: 26.5646 bits (57), Expect = 1.039e-37
Identity = 11/30 (36.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            K +LQDIAI+TG +  + +LG  +++ +++
Sbjct:  284 KEMLQDIAILTGGQVISEELGYDLKDVTLD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.039e-37
Identity = 77/174 (44.25%), Postives = 118/174 (67.82%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAI-KDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q  ++ + KD+TTI+       +I+AR  Q+++++ ET S YD EKL ER+AKL+GGVAV+K+GAATE E++++K R+EDA +AT AA+EEGIVPGGG A +     + A+ K ++E+ D+++G  IVQ+AL  P   IA NA         +VK+ +   G+NA T+++ N+L
Sbjct:  319 QAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDYDREKLQERLAKLAGGVAVLKIGAATEPEMKEKKARVEDALHATRAAVEEGIVPGGGVAYIRA---IAALDKVEVENEDQKIGVQIVQRALEEPLRQIAANAGWEGSIVVQRVKEGQGDFGFNAQTEEFGNLL 489          

HSP 2 Score: 28.1054 bits (61), Expect = 1.039e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG    + + G  +EN +++
Sbjct:  286 KAMLEDIAILTGGTVISEEKGYRLENATLD 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_PYRSA (60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.352e-37
Identity = 84/172 (48.84%), Postives = 117/172 (68.02%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            Q R++T+ K+ TTIIA+   + E++AR  Q+++++  ++S Y+ EKL ER+AKL+GGVAVIKVGAATETE +D+KLR+EDA NAT AA+EEGIVPGG   +  + D     +D L D DE +GA IV+KAL AP   I  N          K+KD +++ GYNA   + E+M
Sbjct:  348 QARRITVVKEGTTIIAEGHER-EVKARCEQIRRQIEASESSYEREKLQERLAKLAGGVAVIKVGAATETE-KDKKLRLEDAINATKAAVEEGIVPGGATLIHFIEDLNDWAEDNLLD-DELIGALIVEKALSAPMKRIIENTGISSSIIIEKIKDKDFSIGYNAAQGEIEDM 516          

HSP 2 Score: 27.335 bits (59), Expect = 1.352e-37
Identity = 11/30 (36.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            K +L+DIAI+TG +  + D G  +E   ++
Sbjct:  315 KTMLEDIAILTGGQVISEDAGFSLETVQLD 344          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_PROM0 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.352e-37
Identity = 82/170 (48.24%), Postives = 116/170 (68.24%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENM 619
            +K+TI KD TTI+A   +KD ++ R+ +LK+E+  T+S YD +K+ ERIAKL+GGVA+IKVGAATETE++ +KLRIED+ NAT AAIEEG+V GGG  L+ +SD +  +  K    D R G +IV++AL+ P   IA NA         ++K      G+NA + KYE++
Sbjct:  319 KKITITKDKTTIVAFEDTKDLVKGRVEKLKREVNITESEYDQDKINERIAKLAGGVALIKVGAATETEMKYKKLRIEDSLNATKAAIEEGVVSGGGQTLIEISDDLLNL-SKTSTDDLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEIK--RLNKGFNANSGKYEDL 485          

HSP 2 Score: 28.1054 bits (61), Expect = 1.352e-37
Identity = 12/29 (41.38%), Postives = 20/29 (68.97%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA L+DIAI+TGA+  + D  + ++  S+
Sbjct:  284 KAALEDIAILTGAKLISEDKSMTLDKVSI 312          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_AGGAC (60 kDa chaperonin OS=Aggregatibacter actinomycetemcomitans GN=groL PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.353e-37
Identity = 77/173 (44.51%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q +++ I KD+TTII     + +IQ R+AQ+++++ E+ S YD EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEGIV GGG AL+  +  V  ++   E+ ++ +G  +  +A+ AP   I  NA          VK+ E   GYNA T++Y +M+
Sbjct:  319 QAKRIVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAAGRVVGLQG--ENEEQNVGIKLALRAMEAPLRQIVANAGEEASVIASAVKNGEGNFGYNAGTEQYGDMI 489          

HSP 2 Score: 28.1054 bits (61), Expect = 1.353e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIAI+T     + ++G+ +E  ++E
Sbjct:  286 KAMLQDIAILTAGTVISEEIGMELEKATLE 315          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_KLEPN (60 kDa chaperonin OS=Klebsiella pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.353e-37
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q ++V I KD+TTII     +  IQ R+AQ++K++ E  S YD EKL ER+AK++GGVAVIKVGAATE E++++K R++DA +AT AA+EEG+V GGG ALV ++  +  +  + E  D+ +G  +  +A+ AP   I  NA          VK  +   GYNA T++Y NM+
Sbjct:  318 QAKRVVINKDTTTIIDGVGEESAIQGRVAQIRKQIEEATSDYDREKLQERVAKVAGGVAVIKVGAATEVEMKEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLTGQNE--DQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGNYGYNAATEEYGNMI 488          

HSP 2 Score: 28.4906 bits (62), Expect = 1.353e-37
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+LQDIA +TG    + ++G+ +E  ++E
Sbjct:  285 KAMLQDIATLTGGTVISEEIGMELEKATLE 314          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PORGI1.039e-3747.3460 kDa chaperonin OS=Porphyromonas gingivalis GN=g... [more]
CH60_PORG31.039e-3747.3460 kDa chaperonin OS=Porphyromonas gingivalis (str... [more]
CH60_GEMAT1.039e-3746.2460 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_OENOB1.039e-3745.6660 kDa chaperonin OS=Oenococcus oeni (strain BAA-3... [more]
CH60_THETN1.039e-3749.4260 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH60_RHOMR1.039e-3744.2560 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_PYRSA1.352e-3748.8460 kDa chaperonin, chloroplastic OS=Pyrenomonas sa... [more]
CH601_PROM01.352e-3748.2460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_AGGAC1.353e-3744.5160 kDa chaperonin OS=Aggregatibacter actinomycetem... [more]
CH60_KLEPN1.353e-3744.5160 kDa chaperonin OS=Klebsiella pneumoniae GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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