CK740108

Overview
NameCK740108
Unique NameCK740108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_NATTJ (60 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groL PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.632e-42
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R+VTI KD TTI+    ++++IQ RI QL+ ++ ET S +D EKL ER+AKL+GGVAV++VGAATETE++++KLRIEDA N+T AA+EEGIV GGG AL+   D +P++++   D DE  G  IV++AL  P   +AHN+         +VK      G+NA+ + Y NML
Sbjct:  319 RQVTITKDDTTIVDGYGNEEDIQKRITQLRTQIEETTSDFDREKLEERLAKLAGGVAVVEVGAATETEMKEKKLRIEDALNSTRAAVEEGIVAGGGTALI---DVLPSLEEVQADGDESTGVSIVRRALEEPVRQLAHNSGAEGSIVAEQVKQKGTNIGFNALENDYTNML 486          

HSP 2 Score: 31.187 bits (69), Expect = 2.632e-42
Identity = 12/29 (41.38%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIA++TG +  + D+GL ++N  +
Sbjct:  284 KAMLEDIAVLTGGQVISEDVGLELKNADI 312          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.632e-42
Identity = 84/173 (48.55%), Postives = 117/173 (67.63%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q +KV + KD TT++  A SKD+I AR+A++K ++ +T S +D +KL ER+AKLSGGVAV++VGAATETEL++RK RIEDA NAT AA+EEG V GGG AL+++   V  ++    + DE+ G +IV +AL  P   IA NA          +K  +   GYNA  +KYE+M+
Sbjct:  317 QAQKVNVTKDDTTVVEGAGSKDQIAARVAEIKGQIEDTTSDFDRDKLKERLAKLSGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALINVIGDVAKLE---AEGDEKTGINIVLRALEEPVRQIAQNAGVEGSVVVEHLKGEKPGVGYNAADNKYEDMV 486          

HSP 2 Score: 33.8834 bits (76), Expect = 2.632e-42
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA LQDIA++TG      DLGL +++T+++Q
Sbjct:  284 KAQLQDIAVLTGGTVITDDLGLNLKDTTIDQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.633e-42
Identity = 86/173 (49.71%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  104 QPRKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            Q R++T+ KDSTTI+  A SK+ I  R+  ++K++ ++ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV++   V  +K   E  DE+ G +IV +AL AP   IA NA         K++  E   GYNA TDK+ENM+
Sbjct:  317 QARRITVTKDSTTIVGGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKG--ETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMV 487          

HSP 2 Score: 31.5722 bits (70), Expect = 2.633e-42
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 95
            KA LQDIA +TG      DLGL +++T ++Q
Sbjct:  284 KAQLQDIAALTGGTVITEDLGLELKDTKIDQ 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.633e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + KD TT++     ++ I AR+ Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA         ++K +E   G+NA T+++ NML
Sbjct:  320 KVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNML 486          

HSP 2 Score: 33.113 bits (74), Expect = 2.633e-42
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+D+AI+TGA+    DLGL +++ S++
Sbjct:  284 KAMLEDLAILTGAQVITDDLGLELKDASLD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.633e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + KD TT++     ++ I AR+ Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  IK    + D   G +IV KAL AP   IA NA         ++K +E   G+NA T+++ NML
Sbjct:  320 KVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYQKVSEIK---AEGDVETGVNIVLKALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATNEWVNML 486          

HSP 2 Score: 33.113 bits (74), Expect = 2.633e-42
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+D+AI+TGA+    DLGL +++ S++
Sbjct:  284 KAMLEDLAILTGAQVITDDLGLELKDASLD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.633e-42
Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + KD+TTI+     K+ I AR+ QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+ EGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA         K+K +E   GYNA TD++ NML
Sbjct:  320 KVEVTKDNTTIVNGDGDKNSIDARVTQLKSQIEETNSDFDREKLQERLAKLTGGVAVIKVGAASETELKERKLRIEDALNSTRAAVGEGIVAGGGTALVNVYKQVSEIE---AEGDVETGINIVLKALEAPVRQIAENAGLEGSIIVEKLKHAEPGIGYNAATDEWVNML 486          

HSP 2 Score: 33.113 bits (74), Expect = 2.633e-42
Identity = 14/30 (46.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            K++L+DIAI+TGA+F   DLG  +++ +V+
Sbjct:  284 KSMLEDIAILTGAQFITDDLGYDLKDATVD 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.430e-42
Identity = 83/171 (48.54%), Postives = 119/171 (69.59%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            ++V+I KD+TTI+  A ++  ++ R+ Q++ ++ +T S YD EKL ER+AKL GGVAVI VGAATE E++++K R+EDA NAT AA+EEGIVPGGG ALV   D V   K      ++++GA +V +AL AP  +IA+NA         KVK++E + GYNA TD YE+++
Sbjct:  320 KRVSIDKDNTTIVDGAGARSALEGRVKQIRAQIDDTTSDYDREKLQERLAKLIGGVAVINVGAATEVEMKEKKARVEDALNATRAAVEEGIVPGGGVALVRAIDAVAKAK---ITGEQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKVKNTEGSFGYNADTDTYEDLI 487          

HSP 2 Score: 32.7278 bits (73), Expect = 3.430e-42
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+L+DIAI+TG    + D+G+ +EN S+
Sbjct:  285 KAMLEDIAILTGGTVVSEDMGIKLENMSL 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.430e-42
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            R++TI KD+TTI+A+  ++  + AR  Q+KK++ ETDS YD EKL ER+AKL+GGVAV+KVGAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    +     +E +GA+IV  AL AP   IA NA          VK      GYNA    Y +ML
Sbjct:  320 RRITINKDTTTIVAEG-NEAAVGARCEQIKKQMDETDSTYDKEKLQERLAKLAGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNEGYNAANGDYVDML 489          

HSP 2 Score: 30.0314 bits (66), Expect = 3.430e-42
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+D+A++T  +    D GL +EN  +E
Sbjct:  285 KAMLEDMAVLTNGQLITEDAGLKLENAKLE 314          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH60_BACSK (60 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groL PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.430e-42
Identity = 87/170 (51.18%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  113 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            KV + K++TTI+  A   ++I  R+ QLK ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETE+++RKLRIEDA N+T AA+EEGIV GGG ALV++   + A+K      DE  G +IV +AL  P   IAHNA         K+K  E   GYNA T +Y NM+
Sbjct:  320 KVVVTKENTTIVEGAGDPEQISGRVNQLKAQVEETTSEFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNV---IKAVKAVDATGDEATGVNIVLRALEEPVRQIAHNAGLEGSIIVEKLKAEEVGVGYNAATGEYVNMV 486          

HSP 2 Score: 32.3426 bits (72), Expect = 3.430e-42
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSVE 92
            KA+L+DIAI+TG +    DLGL +++ ++E
Sbjct:  284 KAMLEDIAILTGGQVITEDLGLDLKSATIE 313          
BLAST of CK740108 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.430e-42
Identity = 84/171 (49.12%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  110 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXKVKDSEWTTGYNAMTDKYENML 622
            +KV I K+ TTI+     K+ +  RIAQ+KK++ ETDS YD EKL ER+AKL+GGVAVI+VGAATETEL+++K R+EDA  AT AA+EEGIVPGGGA LVH    +PA++    + DE +G  IV++AL  P   IA NA         +V+  +   G++A+ ++Y +M+
Sbjct:  320 KKVKIAKEKTTIVEGYGKKEAVDGRIAQIKKQIEETDSDYDREKLQERLAKLAGGVAVIRVGAATETELKEKKHRVEDALAATRAAVEEGIVPGGGATLVHA---IPAVEKIQAEGDEAVGVRIVRRALEEPLRQIAANAGLEGSVIVERVRSEQPGIGFDAVKEEYVDMI 487          

HSP 2 Score: 33.8834 bits (76), Expect = 3.430e-42
Identity = 14/29 (48.28%), Postives = 22/29 (75.86%), Query Frame = 3
Query:    3 KALLQDIAIVTGAEFQAGDLGLLIENTSV 89
            KA+++DIAI+TG  F + DLG+ +EN  +
Sbjct:  285 KAMMEDIAILTGGTFLSEDLGVKLENVDL 313          
The following BLAST results are available for this feature:
BLAST of CK740108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NATTJ2.632e-4249.1260 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH60_LACBA2.632e-4248.5560 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH60_LACHE2.633e-4249.7160 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH60_STAES2.633e-4251.1860 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ2.633e-4251.1860 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STACT2.633e-4252.9460 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH60_DESAA3.430e-4248.5460 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH601_SYNS93.430e-4251.4660 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_BACSK3.430e-4251.1860 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH601_MOOTA3.430e-4249.1260 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740108 ID=CK740108; Name=CK740108; organism=Citrus sinensis; type=EST; length=623bp
GAAAAGCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGAGTTTCAA
GCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGCAGCCTAG
GTACAGCCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATTATTGC
TGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCTGAAAA
AGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTGCTGAG
AGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGAGCTGC
CACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGCCAAGA
ATGCAACTTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTGGTGCT
GCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAGCTTGA
AGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACTGGTAG
CACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGGGTGTT
GTGGAGAAGGTGAAAGATAGTGAATGGACGACTGGGTACAATGCAATGAC
AGACAAGTATGAGAACATGCTTC
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