CK740119

Overview
NameCK740119
Unique NameCK740119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK740119 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.604e-13
Identity = 66/173 (38.15%), Postives = 81/173 (46.82%), Query Frame = 2 
Query:   14 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRVAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 520
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNGR+AM  MFG  VQ  VT +GP+ NL +HL  P+  N  A
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAANIGA 140
The following BLAST results are available for this feature:
BLAST of CK740119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
LH15_EUGGR4.604e-1338.15Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6613 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740119 ID=CK740119; Name=CK740119; organism=Citrus sinensis; type=EST; length=650bp
GCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCA
TCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAG
CTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGC
GGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAA
GCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTC
TTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGA
AGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAAT
GGAAGGGTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGT
CACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTG
TCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGA
GCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTA
AATCTGTTGTGAGCTCATGGAAGCTTTATTTGAGTTGGATTATTTATAAA
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