CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:192..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.173e-32
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.173e-32
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.173e-32
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.173e-32
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.614e-32
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.614e-32
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            +I R E+KG  L G KLM V    AE HY +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:   21 VISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.614e-32
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            I+ RFE+KGF L  LK +   R  AE+HY     +PFF  L+++ITSGPV+AMIWEGEGV+   R +IG+T P  + PGTIRGDLAI  GRN+IHGSD  E+A  EI LWF    + +W  S   W  E
Sbjct:   23 ILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEGVILGARKLIGSTKPLDADPGTIRGDLAIDIGRNVIHGSDGPETASFEIGLWFESSELSDWNPSDQLWRVE 151          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.458e-32
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 384
            II RFEK+GF + GLK++ + R  AEKHY +   KPFF  L+ YITS PVVAM+ EG+  V   R ++GAT+P ++APGTIRG   I  GRN+IHGSDS  SAQ+EIAL+F  D  + +   L  W+YE
Sbjct:   21 IIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.823e-32
Identity = 64/127 (50.39%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY 381
            +I R E++G  L   KLM V R  AE+HY  L  KPFF SLIE+ITSGPV+AM+WEG   +   R  +GATNPA + PGTIR D A     N++HGSD  ESA++EI LWF +   ++  S+  WI+
Sbjct:   21 VISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFACDVSYNVVHGSDGPESAEREIRLWFGEVEPSYSRSVDRWIF 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.694e-31
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II RFE KG++L  L+++T     AE HY +   KPFFG L+E++TSGPVVAM WEGE +V   R +IG T P  + PGTIRGD A    +N+IHGSDSV+SA++E++LWF +
Sbjct:   21 IISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELVEFLTSGPVVAMEWEGEDIVAVSRLMIGKTKPVDAQPGTIRGDFASTMSQNVIHGSDSVDSAERELSLWFAE 133          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAA81.173e-3252.71Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA31.173e-3252.71Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA21.173e-3252.71Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA11.173e-3252.71Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAW2.614e-3251.94Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS2.614e-3251.94Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_PROM42.614e-3252.71Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PELTS4.458e-3253.49Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_SYMTH5.823e-3250.39Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_EXISA1.694e-3153.98Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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