CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:192..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.890e-31
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            I+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESAQ+EI L+F PD  +++Q ++  WI
Sbjct:   21 IVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDKM_MOUSE (Nucleoside diphosphate kinase, mitochondrial OS=Mus musculus GN=Nme4 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.890e-31
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLH 369
            +I RFE++GF L G+K++        +HY DL  KPF+ +LI Y++SGPVVAM+WEG  VV   R +IG T+  ++APGTIRGD ++   RN+IH SDSV+ AQ+EI LWF     +NW    H
Sbjct:   56 VIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPALISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVDGAQREIELWFQSSELLNWADGGH 179          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DESHY (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.929e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 384
            II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:   21 IIARFETKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DESHD (Nucleoside diphosphate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.929e-31
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 384
            II RFE KG  L G+KLM+VD+  AE+HY +   K FF   ++YI S PVVAM+WEG+ VV   R ++GATNPA + PG+IRG   +   RN+IHGSDSV SA++EIAL+F P+   +++ +   W+ E
Sbjct:   21 IIARFEAKGCKLVGMKLMSVDQALAEQHYAEHKGKSFFEPTVQYIMSSPVVAMVWEGKNVVALARELMGATNPANANPGSIRGSFGMDISRNVIHGSDSVASAEREIALYFRPEELCDYRKAGEEWLSE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.408e-31
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN 351
            II R E+KGF ++ +K+M V    A+ HY + + KPFFG L+ ++TSGPVVA+  EGE VV   R +IG T P ++ PGTIRGD A     N+IHGSDSVESA++E+ LWF   P+N
Sbjct:   21 IIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHGSDSVESAERELGLWFQGQPLN 137          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_LISIN (Nucleoside diphosphate kinase OS=Listeria innocua GN=ndk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.098e-30
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            I+ + EKKG  L   KLM +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+KT R ++G TNP ++ PGTIR + AI T RN+IHGSDS ESA++EI L+F P   ++++ ++  WI
Sbjct:   21 IVAKIEKKGIKLVAGKLMQIDRTLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKTARRMMGKTNPLEADPGTIRAEYAIHTNRNVIHGSDSPESAKREIQLFFEPHEILSYEKAVDTWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_LISMH (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=ndk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.434e-30
Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            I+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS+ESA++EI L+F P   +++Q ++  WI
Sbjct:   21 IVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSLESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CORU7 (Nucleoside diphosphate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ndk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.434e-30
Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R E+KG  L  + L T DR  AEKHYE+   KPFFG L+++ITS P+VA I EGE  +   R + G T+P ++A PGTIRGD A+  G N++HGSDS ESA++EIA+WFP+
Sbjct:   22 IISRIERKGLKLVEMDLRTADRATAEKHYEEHKDKPFFGELVDFITSAPLVAGIVEGESAIAAWRQLAGGTHPVEAATPGTIRGDFALTVGENVVHGSDSPESAEREIAIWFPN 135          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.873e-30
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD--GPINWQSSLHPWIYE 384
            +I R E+KG  +  L++  +DR  AEK YE+   KPFF  LIEY+TSGPVV MI EG   VK  R IIGAT+PA++APGT+RGD A+  GRN++H SDS ESA++EI + F      I+++     W+YE
Sbjct:   24 VIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLIEYVTSGPVVVMIVEGRKAVKVVRNIIGATDPAEAAPGTVRGDFALDIGRNVVHASDSPESAEREIEIVFGKDLSTIDYERCDEEWLYE 153          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CORJK (Nucleoside diphosphate kinase OS=Corynebacterium jeikeium (strain K411) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.446e-30
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R EKKG  L  L L T DR  AEKHY + S KPFFG L+++ITS P+VA I EGE  +   R + G T+P + A PGTIRGD A+  G N++HGSDS ESA++EI +WFP+
Sbjct:   22 IISRIEKKGLKLVELDLRTADRETAEKHYAEHSDKPFFGELVDFITSAPLVAGIVEGESAIAAWRQLAGGTHPVEKATPGTIRGDFALTVGENVVHGSDSPESAEREIGIWFPN 135          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LISMO2.890e-3152.76Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDKM_MOUSE2.890e-3149.19Nucleoside diphosphate kinase, mitochondrial OS=Mu... [more]
NDK_DESHY4.929e-3150.39Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_DESHD4.929e-3150.39Nucleoside diphosphate kinase OS=Desulfitobacteriu... [more]
NDK_EXIS28.408e-3152.14Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_LISIN1.098e-3051.18Nucleoside diphosphate kinase OS=Listeria innocua ... [more]
NDK_LISMH1.434e-3051.18Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_CORU71.434e-3054.39Nucleoside diphosphate kinase OS=Corynebacterium u... [more]
NDK_METKA1.873e-3050.77Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK_CORJK2.446e-3055.26Nucleoside diphosphate kinase OS=Corynebacterium j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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