CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:192..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CORGL (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum GN=ndk PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.446e-30
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   22 IIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CORGB (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum (strain R) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.446e-30
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP-AQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P A++ PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   22 IIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVAKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CHLAD (Nucleoside diphosphate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.446e-30
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE-GVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI--NWQSSLHPWIYE 384
            II RFE++G   +GLKLM VD   A +HY +   K FF  L++YITS PVV  +  G+ G V+  RT++GATNPA++APGTIRGD  +  GRN+IH SDS ES ++E A++F    +  +W  +L  WIYE
Sbjct:   21 IISRFEQRGLKFQGLKLMQVDEALARRHYAEHEGKSFFEGLVKYITSAPVVVAVVAGKPGTVELVRTMVGATNPAKAAPGTIRGDFGVDIGRNLIHASDSPESGERETAIFFQPHELIGDWNRTLDGWIYE 151          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_LISMF (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.195e-30
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            I+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:   21 IVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DEIDV (Nucleoside diphosphate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.195e-30
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ R  +KG+ + GLK M + R  AE HY +   +PFFG L+++IT GPVVA+  EGE  +   R ++GATNPA +APGTIR D A  TG N+ HGSDS ESAQ+E+AL+F +G +
Sbjct:   21 ILARIARKGYRVVGLKQMVIARETAENHYGEHRERPFFGELVDFITGGPVVAIALEGENAIAGWRAMMGATNPANAAPGTIRADFATTTGENVTHGSDSAESAQRELALFFQEGEL 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_LISMC (Nucleoside diphosphate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ndk PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.173e-30
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            I+ R EKKG  +   KLM +DR  AEKHY +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D A+ T RN+IHGSDS ESA++EI L+F P   +++Q ++  WI
Sbjct:   21 IVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_COREF (Nucleoside diphosphate kinase OS=Corynebacterium efficiens GN=ndk PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.173e-30
Identity = 61/114 (53.51%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+E+ITS P++A I EGE  +   R + G T+P   A PGTIRGD A+  G N++HGSDS ESA++EI++WFP+
Sbjct:   22 IIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELVEFITSAPLIAGIVEGERAIDAWRQLAGGTDPVSKATPGTIRGDFALTVGENVVHGSDSPESAEREISIWFPN 135          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDKM_COLLI (Nucleoside diphosphate kinase, mitochondrial OS=Columba livia GN=NME4 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.173e-30
Identity = 58/121 (47.93%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQS 360
            +I RFE++GF L  +KL+  D+   +KHY+ L  KPF+ +L+ Y+TSGP+VAM+WEG  VV++ R ++G T+ A +A GTIRGD ++   RN++H SDSVE+AQ+EI  WF     + W+S
Sbjct:   52 VIQRFERRGFKLVAMKLLQADQGLLDKHYQQLRQKPFYPALLAYMTSGPLVAMVWEGYNVVRSTRAMVGDTDSAVAAAGTIRGDFSMHVSRNVVHASDSVETAQREIGFWFQRNELVAWES 172          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_HALMA (Nucleoside diphosphate kinase OS=Haloarcula marismortui GN=ndk PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 60/131 (45.80%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 384
            I+ RFE +G  + G K M +D+  AE+HY +   KPFF  L+++ITSGPV AM+WEG+   +  RT++G T+PA+SAPGTIRGD  +  GRN+IHGSD  +    ++EI L+F +   ++W      W+YE
Sbjct:   24 IVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEAELVDWDQIDSSWLYE 154          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METS3 (Nucleoside diphosphate kinase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=ndk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.118e-30
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ RFE+KG  +  +KLM +D   A+ HY + + KPFFGSLIEYITS P +AM+ EGE  + T R ++GATNP ++  GTIRGD A+ TGRNIIH SDS +SA++EI L+F +  I
Sbjct:   22 ILSRFEEKGLQIVAVKLMQIDEDLAKTHYGEHADKPFFGSLIEYITSSPSLAMVIEGEEAISTIRKLVGATNPLEADLGTIRGDFAMDTGRNIIHASDSPDSAEREINLFFNEDEI 137          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CORGL2.446e-3053.51Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CORGB2.446e-3053.51Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CHLAD2.446e-3049.62Nucleoside diphosphate kinase OS=Chloroflexus aggr... [more]
NDK_LISMF3.195e-3051.18Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_DEIDV3.195e-3051.72Nucleoside diphosphate kinase OS=Deinococcus deser... [more]
NDK_LISMC4.173e-3050.39Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_COREF4.173e-3053.51Nucleoside diphosphate kinase OS=Corynebacterium e... [more]
NDKM_COLLI4.173e-3047.93Nucleoside diphosphate kinase, mitochondrial OS=Co... [more]
NDK_HALMA5.450e-3045.80Nucleoside diphosphate kinase OS=Haloarcula marism... [more]
NDK_METS37.118e-3054.31Nucleoside diphosphate kinase OS=Methanobrevibacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
back to top