CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_THERP (Nucleoside diphosphate kinase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 378
            ++ R E++G    GLKLM VDR  AE+HY +   KPF+  L+ +ITSGPVV  + EG   ++  R  +G T+PAQ+ PGTIRGDLA+  G+N+IHGSDS E A  EI L+F  D  ++++ ++  WI
Sbjct:   21 VLRRLEQRGLRFVGLKLMKVDREVAERHYAEHRGKPFYEDLLAFITSGPVVVGVVEGPRAIEITRKTMGKTDPAQAEPGTIRGDLALTIGQNVIHGSDSPEKASYEIGLFFREDELVSYERAIDRWI 147          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_NOCFA (Nucleoside diphosphate kinase OS=Nocardia farcinica GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.136e-27
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            ++ R E+KG  +  L+L  V    A +HY + + KPFFGSLIE+ITSGPVVA + EG   +   R + G T+P + +APG+IRGD  + T  N++HGSDS ESA++EI LWFP+ P+
Sbjct:   22 VLARIERKGLKIAALELKQVSDELAREHYAEHADKPFFGSLIEFITSGPVVAAVLEGPRAIAAFRQLAGGTDPVEKAAPGSIRGDFGLETQYNLVHGSDSPESAKREIGLWFPEFPV 138          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METTH (Nucleoside diphosphate kinase OS=Methanobacterium thermoautotrophicum GN=ndk PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.136e-27
Identity = 60/129 (46.51%), Postives = 86/129 (66.67%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 384
            II RFE +G  +   K++ +    A +HY++   KPFF  L++YITS PV+AM+ EG+  +   R ++GATNPA++  GTIRGD A+ TGRNIIH SDS ESA++EI L+F +  I +++      IYE
Sbjct:   21 IIARFEDRGLKIVAFKMLQIPEDLAMEHYQEHREKPFFRDLVDYITSAPVIAMVIEGKDCISLIRKMVGATNPAEADLGTIRGDFALETGRNIIHASDSPESAEREIKLFFDESEICSYEMPDREMIYE 149          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METST (Nucleoside diphosphate kinase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.136e-27
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            I+ RFEK+G  +   K + +    A+ HY + S KPFF  LI YITSGPV AM+ EG+ V+   R ++GATNP ++  GTIRGD  I TGRNI+H SDS ESAQ+EI L+F +
Sbjct:   22 ILTRFEKRGLKVIAAKTLMISEDLAKTHYGEHSDKPFFNDLISYITSGPVFAMVLEGDDVISLVRKMVGATNPKEADIGTIRGDYGIDTGRNIVHASDSEESAQREINLFFDE 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_THEFY (Nucleoside diphosphate kinase OS=Thermobifida fusca (strain YX) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            +I R E+KG  +  ++L T+D   A+ HYE+   KPFF SL+E+IT GP+VAM+ EG   ++  R++ GAT+P  +APGTIRGD  +    NI+HGSDS  SA++EI L+FPD
Sbjct:   21 VISRIERKGLKIVAMELRTLDEETAKAHYEEHVEKPFFSSLVEFITGGPLVAMVVEGNRAIEAFRSLAGATDPVLAAPGTIRGDYGLDVQANIVHGSDSTYSAEREIKLFFPD 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PYRHO (Nucleoside diphosphate kinase OS=Pyrococcus horikoshii GN=ndk PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 62/131 (47.33%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 384
            II RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI+YIT  PVV M+ EG   V+  R + GAT+P  +APGTIRGD  +       N+IH SDS ESA++EI+L+F    +        W Y+
Sbjct:   24 IISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYK 154          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_MYCUA (Nucleoside diphosphate kinase OS=Mycobacterium ulcerans (strain Agy99) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 336
            II R E+KG ++  L+L  V    A +HY +   KPFFGSL+E+ITS PVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDS ESAQ+EIALWFP
Sbjct:   22 IISRIERKGLAIAALELRNVTEELASQHYAEHEGKPFFGSLLEFITSAPVVAAIVEGPRAIAAFRQLAGGTDPVEKATPGTIRGDFGLETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_MYCPA (Nucleoside diphosphate kinase OS=Mycobacterium paratuberculosis GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II R E+KG +L  L+L  V +  A +HY +   KPFF SL+E+ITSGPVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDSVESA++EI LWFPD
Sbjct:   22 IIGRIERKGLTLVALELRHVSQDLAAQHYAEHEGKPFFASLLEFITSGPVVAAIVEGPRAIAAFRQLAGGTDPVEKAIPGTIRGDFGLETQFNLVHGSDSVESAKREIGLWFPD 135          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_MYCMM (Nucleoside diphosphate kinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 336
            II R E+KG ++  L+L  V    A +HY +   KPFFGSL+E+ITS PVVA I EG   +   R + G T+P + A PGTIRGD  + T  N++HGSDS ESAQ+EIALWFP
Sbjct:   22 IISRIERKGLAIAALELRNVTEELASQHYAEHEGKPFFGSLLEFITSAPVVAAIVEGPRAIAAFRQLAGGTDPVEKATPGTIRGDFGLETQFNLVHGSDSAESAQREIALWFP 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.484e-27
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 384
            +I RFE++GF +   +   +      +HY +   KPFF  L  YITSGP   M+WEG+ +VK  R +IGATNPA +APGTIRGD A+  G N+IHGSDSVE+A +EIA+ F P+  +++      ++YE
Sbjct:   21 VITRFERRGFKMVASRFEKLPDARVMEHYAEHVQKPFFPGLKAYITSGPCFLMVWEGKDIVKISRDMIGATNPAGAAPGTIRGDYALEIGMNVIHGSDSVETANREIAIHFKPEELVSYTRIDEQYLYE 149          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_THERP6.662e-2847.24Nucleoside diphosphate kinase OS=Thermomicrobium r... [more]
NDK_NOCFA1.136e-2748.72Nucleoside diphosphate kinase OS=Nocardia farcinic... [more]
NDK_METTH1.136e-2746.51Nucleoside diphosphate kinase OS=Methanobacterium ... [more]
NDK_METST1.136e-2752.21Nucleoside diphosphate kinase OS=Methanosphaera st... [more]
NDK_THEFY1.484e-2749.56Nucleoside diphosphate kinase OS=Thermobifida fusc... [more]
NDK_PYRHO1.484e-2747.33Nucleoside diphosphate kinase OS=Pyrococcus horiko... [more]
NDK_MYCUA1.484e-2753.10Nucleoside diphosphate kinase OS=Mycobacterium ulc... [more]
NDK_MYCPA1.484e-2753.51Nucleoside diphosphate kinase OS=Mycobacterium par... [more]
NDK_MYCMM1.484e-2753.10Nucleoside diphosphate kinase OS=Mycobacterium mar... [more]
NDK_METHJ1.484e-2746.51Nucleoside diphosphate kinase OS=Methanospirillum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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