CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STRA5 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype V GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR-----NIIHGSDSVESAQKEIALWF 333
            +I R E++GFS+  L++   D    ++HY +L+ +PFF +L++Y+TSGPV+  +  GE V+ T RT++G+TNP  + PGTIRGD A          NI+HGSDS ESA +EIA+WF
Sbjct:   21 VISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWF 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_STRA1 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype Ia GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR-----NIIHGSDSVESAQKEIALWF 333
            +I R E++GFS+  L++   D    ++HY +L+ +PFF +L++Y+TSGPV+  +  GE V+ T RT++G+TNP  + PGTIRGD A          NI+HGSDS ESA +EIA+WF
Sbjct:   21 VISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWF 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CLOTH (Nucleoside diphosphate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 339
            II RFEK+ F++  LK+M +DR  A +HY  +  KPFF  +I+YITSGPVV M+  G  V++  R+++GAT+   S PGTIRGD       N+IH SDS ESA+ EI  +FP+
Sbjct:   21 IISRFEKRNFTILHLKMMNIDRELACEHYSHVKDKPFFNDMIDYITSGPVVVMVLSGYRVIEAVRSMVGATSNFDSKPGTIRGDYGYHRFENLIHASDSCESAEIEIKRFFPE 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_MYCGI (Nucleoside diphosphate kinase OS=Mycobacterium gilvum (strain PYR-GCK) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.389e-25
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA-PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 336
            II R E KG ++  L+L  V    A  HY +   KPFF SL+E+ITSGPVVA + EG   +   R + G T+P + A PGTIRGDL + T  N++HGSDS +SA +EIALWFP
Sbjct:   22 IISRIEAKGLAIVALELKNVGDDTARAHYAEHEGKPFFASLLEFITSGPVVAAVLEGPRAIAAFRQLAGGTDPVEKAIPGTIRGDLGLETQFNLVHGSDSPDSAAREIALWFP 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_TREPS (Nucleoside diphosphate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            ++ RFE+KG  L  L+L+ VD   AE HY +   KPF+ SLI YITS PVVA+ ++GE  +   RT+ G+T    + PGTIRGD A+ T  NI+H SDS ESA +E+AL+F
Sbjct:   23 VLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAPVVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFALRTTTNIVHASDSPESAARELALYF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_TREPA (Nucleoside diphosphate kinase OS=Treponema pallidum GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            ++ RFE+KG  L  L+L+ VD   AE HY +   KPF+ SLI YITS PVVA+ ++GE  +   RT+ G+T    + PGTIRGD A+ T  NI+H SDS ESA +E+AL+F
Sbjct:   23 VLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLIAYITSAPVVALAFKGENAISLVRTLCGSTRVEHAQPGTIRGDFALRTTTNIVHASDSPESAARELALYF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DEHE1 (Nucleoside diphosphate kinase OS=Dehalococcoides ethenogenes (strain 195) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.814e-25
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ R EK G  + GL+++ +D   A+KHY     +PFF  L+ YITSGP+VA ++EGE  V+  R  +GAT+PA+S  GT+RGDL I   +N +HGSDS E+A+ EI+L+F +  +
Sbjct:   21 ILGRMEKLGLKMIGLRMLQMDAVLADKHYAPHRERPFFKDLVTYITSGPIVAAVFEGENAVEKMRKAMGATDPAKSEKGTVRGDLGINIEQNTVHGSDSAENAKHEISLFFSESEL 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DEHSC (Nucleoside diphosphate kinase OS=Dehalococcoides sp. (strain CBDB1) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ R EK G  L GL+++ +D   A+KHY    ++PFF  L+ YITSGP+ A ++EGE  V+  R  +GAT+PA+S  GT+RGDL I   +N +HGSDS E+A+ EI+L+F +  +
Sbjct:   21 ILGRMEKLGLKLIGLRMLQMDAVLADKHYAPHRARPFFKDLVTYITSGPITAAVFEGENAVEKMRKAMGATDPAKSEKGTVRGDLGINIEQNTVHGSDSAENAKHEISLFFSESEL 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DEHSB (Nucleoside diphosphate kinase OS=Dehalococcoides sp. (strain BAV1) GN=ndk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.370e-25
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ R EK G  L GL+++ +D   A+KHY    ++PFF  L+ YITSGP+ A ++EGE  V+  R  +GAT+PA+S  GT+RGDL I   +N +HGSDS E+A+ EI+L+F +  +
Sbjct:   21 ILGRMEKLGLKLIGLRMLQMDAVLADKHYAPHRARPFFKDLVTYITSGPITAAVFEGENAVEKMRKAMGATDPAKSEKGTVRGDLGIDIEQNTVHGSDSAENAKHEISLFFSESEL 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_HYPBU (Nucleoside diphosphate kinase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=ndk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.095e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            II RFE+KG  +K LK+  + R  AEK YE    KPFF  L+ ++TSGPVVAMI EG+  ++  R +IG T+  ++ PGTIRGD A+  G N+IH SDS ES ++E  ++F D  I
Sbjct:   23 IIARFERKGLKIKALKMKWLTREEAEKLYEVHRGKPFFEDLVNFVTSGPVVAMILEGDSAIEVVRLMIGPTDGRKAPPGTIRGDYALDIGANVIHASDSKESYEREYKVFFSDDEI 138          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STRA51.064e-2546.55Nucleoside diphosphate kinase OS=Streptococcus aga... [more]
NDK_STRA11.064e-2546.55Nucleoside diphosphate kinase OS=Streptococcus aga... [more]
NDK_CLOTH1.064e-2549.56Nucleoside diphosphate kinase OS=Clostridium therm... [more]
NDK_MYCGI1.389e-2551.33Nucleoside diphosphate kinase OS=Mycobacterium gil... [more]
NDK_TREPS1.814e-2550.45Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_TREPA1.814e-2550.45Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_DEHE11.814e-2546.55Nucleoside diphosphate kinase OS=Dehalococcoides e... [more]
NDK_DEHSC2.370e-2546.55Nucleoside diphosphate kinase OS=Dehalococcoides s... [more]
NDK_DEHSB2.370e-2546.55Nucleoside diphosphate kinase OS=Dehalococcoides s... [more]
NDK_HYPBU3.095e-2549.14Nucleoside diphosphate kinase OS=Hyperthermus buty... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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