CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_DIAST (Nucleoside diphosphate kinase OS=Diaphorobacter sp. (strain TPSY) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.113e-20
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 336
            I  RFE  G  +   +++ + R  AE+ Y     +PFF  L++++ SGPV+    EGE  V   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:   23 IYARFEAAGLKIVAARMIHLSRAEAEQFYAVHKERPFFKDLVDFMISGPVMVQALEGENAVLKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVAFFFP 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CHLFF (Nucleoside diphosphate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=ndk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.113e-20
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+E+A  EI+ +F
Sbjct:   21 IVAIFEKAGFRIAAMKMVHLSAKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEISYFF 131          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CAMJE (Nucleoside diphosphate kinase OS=Campylobacter jejuni GN=ndk PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.113e-20
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  I EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   21 ILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIEFFFKPNEI 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANOR (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANOM (Nucleoside diphosphate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANCP (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANCB (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANC8 (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANC5 (Nucleoside diphosphate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_XANAC (Nucleoside diphosphate kinase OS=Xanthomonas axonopodis pv. citri GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.678e-20
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I  RFEK G  +   K   + R  AE  Y     +PFF +L+E++ SGPV+    EGE  V   R ++GATNP  +APGTIR D A     N  HGSDSVE+A  E+A +F
Sbjct:   23 IYSRFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVAAHRDLLGATNPKDAAPGTIRADFADSIDANAAHGSDSVENAANEVAYFF 133          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DIAST5.113e-2041.07Nucleoside diphosphate kinase OS=Diaphorobacter sp... [more]
NDK_CHLFF5.113e-2043.24Nucleoside diphosphate kinase OS=Chlamydophila fel... [more]
NDK_CAMJE5.113e-2042.24Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_XANOR6.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANOM6.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas oryza... [more]
NDK_XANCP6.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANCB6.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANC86.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANC56.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas campe... [more]
NDK_XANAC6.678e-2045.05Nucleoside diphosphate kinase OS=Xanthomonas axono... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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