CK740127

Overview
NameCK740127
Unique NameCK740127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_RHIEC (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   16 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            E  G  +   K + + R  AE  Y     +PFFG L+E +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A +EI  WF D  I
Sbjct:   28 EDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEI 138          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_METNO (Nucleoside diphosphate kinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   16 EKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            E+ G  +   + + +    A+  YE  + +PF+G L+ ++TSGPVV  + EGE  V   R ++GATNPAQ+A GTIR   A+  G N +HGSDS E+A+ EIA +F +  I
Sbjct:   28 EEAGLRIVAQRRIRMSEAQAKTFYEVHAERPFYGELVSFMTSGPVVVQVLEGENAVAKYREVMGATNPAQAAEGTIRKKFALSVGENSVHGSDSAENAKVEIAQFFDEKDI 138          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CAMJR (Nucleoside diphosphate kinase OS=Campylobacter jejuni (strain RM1221) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   21 ILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_CAMJ8 (Nucleoside diphosphate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            I+ RFE  G  +  +K + + +  AE  Y     +PFF  L+E++ SGPVV  + EGEG V   R ++GATNP ++  GTIR D A     N +HGSDS+E+A+ EI  +F    I
Sbjct:   21 ILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSLENAKIEIDFFFKPNEI 136          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_ALISL (Nucleoside diphosphate kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   10 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            R EK G  +   K++++ +  A+  Y +   K FF +L+EY+TSGPV+  + EGE V+   R ++G TNP ++A G++R D AI    N +HGSDS ESA +EIA +F +  I
Sbjct:   26 RIEKTGMQVVAAKMLSLTKEQAQGFYAEHEGKEFFDALVEYMTSGPVMVQVLEGESVITRYRELMGKTNPDEAACGSLRSDYAISMRYNSVHGSDSPESAAREIAYFFVEDEI 138          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 336
            I  RFE  G  +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   23 IYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_VARPS (Nucleoside diphosphate kinase OS=Variovorax paradoxus (strain S110) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.139e-19
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            I+ RFE  G  +   KL+ + R  AE+ Y     +PFF  L++++ SGPV   + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +F
Sbjct:   23 IVSRFEAAGLKIVAAKLVHLSRNEAEQFYSVHKERPFFKDLVDFMISGPVFVQVLEGENAIAKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAANEVAFFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.139e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   10 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA +APGTIR + A   G N +HGSD+ E+A +EIA +F
Sbjct:   26 KFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_PROA2 (Nucleoside diphosphate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.139e-19
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 333
            +I + E+ GF +  +K   +    A + Y   S +PF+G L+E+++SGP V MI E E  V   RT+IGAT+PA++A GTIR   A   G NIIHGSDS E+AQ E   +F
Sbjct:   21 VIDKIERAGFRVVAMKKTKLTAQTAGEFYAVHSQRPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTIRNLFADSKGENIIHGSDSAENAQIEAGFFF 131          
BLAST of CK740127 vs. ExPASy Swiss-Prot
Match: NDK_VIBSL (Nucleoside diphosphate kinase OS=Vibrio splendidus (strain LGP32) GN=ndk PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   10 RFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 348
            R EK G  +   K++++    A   Y +   K FFG L E++TSGP++  + EGE  +   R ++G TNP ++A GTIR D AI    N +HGSDS ESA +EI  +FP+  I
Sbjct:   26 RIEKAGLQIIAAKMVSLTEAQASGFYAEHEGKEFFGPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAACGTIRADYAISMRYNSVHGSDSPESAAREIEFFFPESEI 138          
The following BLAST results are available for this feature:
BLAST of CK740127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RHIEC8.721e-2045.05Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_METNO8.721e-2042.34Nucleoside diphosphate kinase OS=Methylobacterium ... [more]
NDK_CAMJR8.721e-2041.38Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_CAMJ88.721e-2041.38Nucleoside diphosphate kinase OS=Campylobacter jej... [more]
NDK_ALISL8.721e-2041.59Nucleoside diphosphate kinase OS=Aliivibrio salmon... [more]
NDK_ACIAC8.721e-2039.29Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]
NDK_VARPS1.139e-1940.54Nucleoside diphosphate kinase OS=Variovorax parado... [more]
NDK_SILST1.139e-1942.59Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_PROA21.139e-1945.05Nucleoside diphosphate kinase OS=Prosthecochloris ... [more]
NDK_VIBSL1.488e-1941.59Nucleoside diphosphate kinase OS=Vibrio splendidus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6621 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE6G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740127 ID=CK740127; Name=CK740127; organism=Citrus sinensis; type=EST; length=398bp
ATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCT
TATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCAT
CGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTT
GTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTAT
TATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTG
ATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGTT
GAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAA
CTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTG
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