CK740128

Overview
NameCK740128
Unique NameCK740128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:267..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y556_SYNY3 (UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803) GN=slr0556 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 68/188 (36.17%), Postives = 102/188 (54.26%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGC------LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQC----DLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 530
            E+ +QE + K   L +  D+ WHFIG LQSNK + +   V N   + SVDN  IA +L+R+ E + + P + L+Q+    +E+KSG            LEL+K       NL+ CGLMTI +P   S  +   T  + ++    A  I ++      +LSMGMSGD+  AI  G+T +R+G+ +FG R
Sbjct:   45 ESRIQEALPKIEALANYQDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSGWTREELKLDLPQLELLK-------NLKICGLMTI-LPLGLSPGDRQLTFGELKN---LATAINQQSSLSLTELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y531_BUCAP (UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_531 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 63/176 (35.80%), Postives = 90/176 (51.14%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIF 521
            ENYVQE ++K  +L    ++ WHFIG +QSNK K +     N    +++D EKIA  LN+  E     P+ VL+Q+N S E +K+G+      +L K +S   PNL F G+M   MP+            K  + +   L    +  D LS+G S D E A+   S  +RIG  IF
Sbjct:   56 ENYVQEGIDKIQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKS-FPMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIF 224          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y919_MYCLE (UPF0001 protein ML0919 OS=Mycobacterium leprae GN=ML0919 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 59/191 (30.89%), Postives = 94/191 (49.21%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPD----------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM---GRK--PLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 524
            E+  QE   KAA+  +           + WH +G +Q NKV+ L           S+D+ ++   L+R V      GR+  PL+V VQ++  G+ S+ GV  +  G ++ V    +   +LE  GLM  G+P     P+  +   + R E  + L    +   LS GMS DFE+A++ GST VR+G+ + G
Sbjct:   67 ESRAQEASTKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHT---AHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLM--GIPPLGWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLG 250          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y1368_DEIRA (UPF0001 protein DR_1368 OS=Deinococcus radiodurans GN=DR_1368 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG-MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 521
            EN  QE+ +K A LP   EWHFIG LQ NK+K  L GV    +V S++    A  +       G+ P  +L + N  GE  K GV P     +++ V      LE  GLM +    D     + F   A+   +    LG+ E    LSMGMSGD+ LA+  G+T VR+G ++F
Sbjct:   52 ENRGQELRDKVAGLPG-AEWHFIGPLQRNKIK-YLRGV---TLVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHN--GEGQKHGVLPDDLPAVLREV--RATGLEVRGLMAMAPYDDEARAAQVFADTARQAQD----LGLVE----LSMGMSGDYPLAVAAGATLVRVGRSLF 208          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y2153_CORGL (UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum GN=Cgl2153 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 62/182 (34.07%), Postives = 87/182 (47.80%), Query Frame = 3
Query:    3 ENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK------PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 530
            EN  QE   KA +LPD +++H IG +QS K   +       A V SVD+EKIA  L R V     +       L   +Q++  G+ S+ G   S   +L   +S    +L F GLM +  P     PE  K  ++ R  +       +   + S GMSGD   AI+ GST VR+G+ I G R
Sbjct:   46 ENREQEARAKALELPD-MDFHMIGQIQSKKANSIARWA---AAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTT-HLRFEGLMCV--PPLGWGPE--KAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNR 218          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y2172_MYCBO (UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=Mb2172c PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 51/166 (30.72%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   54 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV-----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 530
            + WH +G +Q NK   L           SVD+ ++   L+R V     E    + L+V VQV+  G+ S+ GV+ +  G ++ +    Q    LE  GLM  G+P     P+  +   + +SE  +   +      LS GMS D E+A++ GST VR+G+ + G R
Sbjct:   95 VHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
BLAST of CK740128 vs. ExPASy Swiss-Prot
Match: Y2148_MYCTU (UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis GN=Rv2148c PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 51/166 (30.72%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   54 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV-----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 530
            + WH +G +Q NK   L           SVD+ ++   L+R V     E    + L+V VQV+  G+ S+ GV+ +  G ++ +    Q    LE  GLM  G+P     P+  +   + +SE  +   +      LS GMS D E+A++ GST VR+G+ + G R
Sbjct:   95 VHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
The following BLAST results are available for this feature:
BLAST of CK740128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
Y556_SYNY32.462e-1736.17UPF0001 protein slr0556 OS=Synechocystis sp. (stra... [more]
Y531_BUCAP1.951e-1435.80UPF0001 protein BUsg_531 OS=Buchnera aphidicola su... [more]
Y919_MYCLE1.265e-1330.89UPF0001 protein ML0919 OS=Mycobacterium leprae GN=... [more]
Y1368_DEIRA8.197e-1336.21UPF0001 protein DR_1368 OS=Deinococcus radiodurans... [more]
Y2153_CORGL2.385e-1234.07UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium ... [more]
Y2172_MYCBO2.637e-1130.72UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=... [more]
Y2148_MYCTU2.637e-1130.72UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6622 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740128 ID=CK740128; Name=CK740128; organism=Citrus sinensis; type=EST; length=669bp
GTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGCTTCCAGAT
GATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAAGTGAAACC
TTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGACAACG
AGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAAGGAAG
CCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCGAAATC
TGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGTTAGTCAAA
ACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGGATGCCAGAT
TACACATCGACCCCGGAGAACTTCAAGACATTAGCAAAATGCAGAAGTGA
GGTATGCAAGGCTCTTGGAATACCAGAAGAGCAATGTGATCTGTCTATGG
GAATGTCTGGTGACTTCGAGCTTGCTATTGAAATGGGGAGCACCAATGTC
AGGATTGGATCCACAATATTTGGTGCAAGGGAATATCCGAAGAAGAACTA
AACTTTTTTTTTCACCTGTTCTGAAAACGTTGGCTATTGGTATGTATTTA
TCTTAATGTACTGAAACTAGAGTATAGTAGATTAATCATATTTTTTATGC
ACTTGTTCAAAAAAAAAAA
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