CK740129

Overview
NameCK740129
Unique NameCK740129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 58/173 (33.53%), Postives = 83/173 (47.98%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P
Sbjct:   42 AFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVP 212          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.262e-18
Identity = 58/173 (33.53%), Postives = 83/173 (47.98%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+      +       +   ++GY + S  G  ++   V V  V SA        A D   P   AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P
Sbjct:   42 AFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARS-TAVAIFQGGWALEQLWFFWVVP 212          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.648e-18
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            AFG  +  + +    ISG H+NPAV+FGL+   +      + Y++AQ  G I G G++      +        + S G G ++   GY+  S +  EI+ T   +  +  +TD +           AP+ IG  + ++HL +IPI+ T +NPARS G A ++  D A    W+FW  P
Sbjct:   42 AFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGFGEHS-PGGYSMISVMICEIVMTLFFLLVILGSTDERAPKG------FAPIAIGLCLTLIHLISIPISNTSVNPARSTGPA-LFVGDWAVSQLWLFWAAP 211          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.153e-18
Identity = 58/170 (34.12%), Postives = 79/170 (46.47%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            A G  +  L  C   ISG HINPAVT  L + R +S IRA  Y+ AQC G I G  L+       Y      A + ++        G E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARS G + + N    WD HW++W GP
Sbjct:  105 ASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGP 262          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.153e-18
Identity = 61/164 (37.20%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   52 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-----GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFRWSI 528
            SG H NPAVT    +   +SL RAVAY+ AQ  GA  G  L+         + GG     G N V +  + G A+  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI      +  HWIFWVGP   ++
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGV------TPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAV 222          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 63/193 (32.64%), Postives = 92/193 (47.67%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFRWSIGCSGIPPVHLEGCCY 573
            A G  + V V  TAG  ISGGH+NPAVT  L +   V+L R+  Y+ AQ L +     L++         L    + +A G      + AE + TF L++ +++   DP++      +P   PL  G  V    +A   ++G  +NPARSFG AV       W  HW++WVGP        G   V +  CC+
Sbjct:   59 ALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLT----GGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVA---SGVWTHHWVYWVGPL-----AGGPLAVLVYECCF 234          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.672e-18
Identity = 60/164 (36.59%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   52 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-----GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFRWSI 528
            SG H NPAVT    +   +SL RA+AY+ AQ  GA  G  L+         + GG     G N V +  + G A+  E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARSFG AVI      +  HWIFWVGP   ++
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGV------TPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLAS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAV 222          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.796e-18
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAIC-------------GVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            AFG  +  + Y    ISG H+NPAVT GL    +    + + Y++AQ  GAI              G  + K F  + Y++   G       Y+  +    E++ T + ++ +  AT  +  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    W+FWV P
Sbjct:   43 AFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ------YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAMAQLWLFWVAP 212          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT----VASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            A    + V V  TAG  +SGGH+NPAVT  L +   ++L R+  Y+ AQ  G+     L++         L GGA T    +A G      + AE + TF L+  + +   DP+R+A     P   PL  G  V    +A   +TG  +NPARSFG A+       W  HW++WVGP
Sbjct:   64 AMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRC--------LTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAA----PPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGE---WAHHWVYWVGP 225          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   10 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            G  +  L++  +G+SG ++NPAVT    L+ +V LI ++ Y+ AQ LG I G G++   + + Y  +  G   +A G N G A   E++ T +L   V   +    +  D  +  +AP  IG A+F+        +G  +NP R  G ++I      W  HW++W+GP
Sbjct:   77 GMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMYR-IDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSII---SGVWSHHWVYWLGP 238          
The following BLAST results are available for this feature:
BLAST of CK740129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
AQPZ_ECOL61.262e-1833.53Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO571.262e-1833.53Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
AQPZ_SHEON1.648e-1830.90Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]
BIB_DROME2.153e-1834.12Neurogenic protein big brain OS=Drosophila melanog... [more]
AQP6_RAT2.153e-1837.20Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
TIP43_MAIZE3.672e-1832.64Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
AQP6_MOUSE3.672e-1836.59Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQPZ_BRAJA4.796e-1831.69Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP42_ORYSJ1.068e-1735.03Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
AQPA_DICDI1.068e-1730.95Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740129 ID=CK740129; Name=CK740129; organism=Citrus sinensis; type=EST; length=574bp
TGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCTGGCAT
TTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAA
GGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGTGCTTG
GGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCATGAGTA
CAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAACAAAG
GATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTGTTTACACA
GTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCC
CGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGG
CCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGT
GCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGATCTT
CTGGGTTGGTCCCTTTCGTTGGAGCATTGGCTGCAGCGGCATACCACCAG
TACATCTTGAGGGCTGCTGCTATC
back to top