CK740129

Overview
NameCK740129
Unique NameCK740129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 54/162 (33.33%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   31 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            VY +  +SGGH+NPAVTF + +A ++S+  A+ Y  +Q + ++    ++K  +  ++  +      +A       A   E +  FVLVYTVF+A+DP+R      +P+ + P+ IGF      LA  P +G  +NPA +FG+A++Y + K   +  ++WVGP
Sbjct:   75 VYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPI----YKIAGEMTGFGASVLEGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFK---NQAVYWVGP 224          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 60/168 (35.71%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   31 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            V  TAG  +SGGH+NPAVT GL +   ++ +RAV Y+ AQ L +     L++         L GG  T      +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+   +   W +HW++W+GP
Sbjct:   75 VLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLR--------FLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGD---WTNHWVYWIGP 226          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1
Query:   31 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            V  TAG  +SGGH+NPAVT G+ +   ++ +RA+ Y+ AQ L +     L    +++    +    + + +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+       W +HW++W+GP
Sbjct:   77 VLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLAS----SLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGP 228          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   31 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            V  TAG  +SGGH+NPAVT  L     ++  R+  Y+ AQ L +     L    +++    +    +T+ SG      L  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARSFG A+       W  HWI+W+GP
Sbjct:   71 VLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLAS----SLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGP 222          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 56/169 (33.14%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            +G ++ VLVY    ISGGH NPAVT      R+  LI+  AY+VAQ LG+I   G ++      ++   G   TV +G N   A   E I TF L++ +       R+     V   A + IG  + +  +   P+TG  +NPARS G A ++     ++  WI+ + P
Sbjct:   77 WGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSG---TVPNGTNL-QAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAP 233          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGP 513
            AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA  G  +          ++GG GA     G +   A+ AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+FG     +I+     W+ + I+ +GP
Sbjct:   61 AFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGP 229          

HSP 2 Score: 20.7866 bits (42), Expect = 1.477e-15
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  512 PFVGALAAAAYHQYI 556
            P VGA+ AA  +QY+
Sbjct:  229 PIVGAVLAALTYQYL 243          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 57/179 (31.84%), Postives = 85/179 (47.49%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV-----ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA----RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            AFG  +F  V+  A +SGGH+NPAVTF   +   +++  A+ Y  +Q LG+        A +   Y S G    T       +G+  G   G   + TF++VYTV  A DP+       +      L  L +G       LA   +TG  +NPARSFG AV+  +   + +  ++W GP
Sbjct:   63 AFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGS------TFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEG---VLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGH---YSNQAVYWAGP 227          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 56/174 (32.18%), Postives = 83/174 (47.70%), Query Frame = 1
Query:    4 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGP 513
            AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA     +          ++GG GA     G     A+ AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG     +++     W+   I+ +GP
Sbjct:   61 AFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFGPYLNDMVFAGTNLWNYFPIYVIGP 229          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 1
Query:    7 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPF 516
            +G ++ V++Y T  ISG H NPAVT    + R+    +   Y+ AQ  G++     ++        +  G   T +S    G AL AEII +F+L++ +       R+  +     LA + +G  + +      PI+G  +NPARS G A++    K     W++ VGPF
Sbjct:   82 WGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTDSS----GQALVAEIIISFLLMFVISGVATDSRATGE-----LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKG---IWVYIVGPF 239          
BLAST of CK740129 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   10 GGMIF-VLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGP 513
            GG+I  V++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C   ++KA ++     +     T  SG +   AL  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP
Sbjct:   94 GGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQ----PIAVIGTTTPSGPH-WHALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGP 249          
The following BLAST results are available for this feature:
BLAST of CK740129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
TIP51_ARATH1.822e-1733.33Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP41_MAIZE1.822e-1735.71Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_MAIZE1.181e-1632.93Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ1.543e-1634.76Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
NO26_SOYBN3.437e-1633.14Nodulin-26 OS=Glycine max PE=1 SV=2[more]
AQPM_METTM1.477e-1532.76Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
TIP51_ORYSJ2.463e-1431.84Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQPM_METTH3.217e-1432.18Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
NIP42_ARATH7.166e-1429.41Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP23_MAIZE1.222e-1332.54Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740129 ID=CK740129; Name=CK740129; organism=Citrus sinensis; type=EST; length=574bp
TGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCTGGCAT
TTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAA
GGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTCAGTGCTTG
GGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAGCATGAGTA
CAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTACAACAAAG
GATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTGTTTACACA
GTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCTCACGTGCC
CGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGG
CCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGAGCTTTGGT
GCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCATTGGATCTT
CTGGGTTGGTCCCTTTCGTTGGAGCATTGGCTGCAGCGGCATACCACCAG
TACATCTTGAGGGCTGCTGCTATC
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