CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_SORBI (50S ribosomal protein L14, chloroplastic OS=Sorghum bicolor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A  ++
Sbjct:    3 QPQTLLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPKMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNFTKIVSLAPEVL 123          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/124 (36.29%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA VI++ KG  KG+ + G I +E   L + +I S A  ++
Sbjct:    3 QPQTYLNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CYAP8 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 8801) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ L  + V G            +GD+++A VK   P++   R +++ AVIVR R+P RR  G+ + F+DNA VI+N  G  KG+ + GP+ +E  D  + +I S A  ++
Sbjct:    3 QQQTYLNVADNSGARKLMCLRVLGT----GNCRYGEIGDVIIAVVKDAIPNMPIKRSEIVRAVIVRTRQPVRRASGMSIRFDDNAAVIINNDGNPKGTRVFGPVARELRDKNYTKIVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   70 QQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q  +  ADNTGAK +  I V G   +      A +GD ++A VK+  P++   R  V+ AV+VR +K  RR+DG+++ F+DNA VIVN     +G+ + GP+ +E  D  + +I S A  ++
Sbjct:    5 QTMLTVADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRDKNYSKIVSLAPEVL 121          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q Q  +  ADN+GA+ L  I V G + R      A +GD+++A VK   P++  K   V+ AV+VR  KP RR  G+ + F+DNA VIVN +G  +G+ + GP+ +E  D
Sbjct:    3 QPQTILQVADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARELRD 107          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 387
            Q Q  +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L
Sbjct:    3 QPQTLLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELREL 110          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ +  I V G     N    A +GD+++  VK   P++   +  ++ AVIVR +K  RR DG+ + F+DNA VI+N +   +G+ + GPI KE  D  + +I S A  +V
Sbjct:    3 QIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRDKNFSKIISLAAEVV 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HELMI (50S ribosomal protein L14 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +   DNTGAK L  I V G  G   R  S  VGD+++A+VK+  P     +  V+ AV+VR RKP +R DG ++ F +NA VI+N +   KG+ I GP+ +E  D
Sbjct:    3 QQETRLRVGDNTGAKELLCIRVLG--GSYRRYAS--VGDIIVASVKEATPGGVVKKGDVVKAVVVRTRKPIKRPDGSYIRFSENAAVIINEQKNPKGTRIFGPVARELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_FRASN (50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR +K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:    3 QQESRLRVADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTKKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            ADN+GAK +  I V G  GR      A +GD +M TVK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RK14_SORBI2.267e-1336.2950S ribosomal protein L14, chloroplastic OS=Sorghu... [more]
RK14_FAGEA2.267e-1336.2950S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RL14_CYAP82.961e-1336.2950S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RK14_PHATR2.961e-1336.8950S ribosomal protein L14, chloroplastic OS=Phaeod... [more]
RK14_NEPOL2.961e-1340.0050S ribosomal protein L14, chloroplastic OS=Nephro... [more]
RK14_MAIZE2.961e-1337.8450S ribosomal protein L14, chloroplastic OS=Zea ma... [more]
RK14_GRATL2.961e-1337.1050S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_HELMI3.868e-1340.9150S ribosomal protein L14 OS=Heliobacterium modest... [more]
RL14_FRASN3.868e-1338.1850S ribosomal protein L14 OS=Frankia sp. (strain E... [more]
RL14_CHLPB3.868e-1343.1450S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
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