CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_SYNS9 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9902) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 423
            Q +  +  ADN+GAK +  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +   RR+ G  + F+DNA VI+N     KG+ + GP+ +E  +  + +I S A  ++
Sbjct:    3 QQESFLTVADNSGAKRIQCIRVLGTNRRY-----AHVGDVIVAAVKDAMPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVIINDDKNPKGTRVFGPVARELRERSFTKIVSLAPEVI 121          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PROMT (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain NATL2A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            ADN+GAK L  I V G   R      A VGD+++A+VK   P++  K   V+ AV+VR R   RR+ G  + F+DNA V++N     +G+ + GP+ +E  +  + +I S A  ++
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVASVKDAMPNMGVKKSDVVKAVVVRTRATMRRETGNSIRFDDNAAVLINDDQNPRGTRVFGPVARELRERNFTKIVSLAPEVI 121          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PROM1 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain NATL1A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            ADN+GAK L  I V G   R      A VGD+++A+VK   P++  K   V+ AV+VR R   RR+ G  + F+DNA V++N     +G+ + GP+ +E  +  + +I S A  ++
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVASVKDAMPNMGVKKSDVVKAVVVRTRATMRRETGNSIRFDDNAAVLINDDQNPRGTRVFGPVARELRERNFTKIVSLAPEVI 121          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_LACPL (50S ribosomal protein L14 OS=Lactobacillus plantarum GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q +  +  ADN+GA+ +  I V G  GR     +A +GD+++ATVK+  P    K   V+ AVIVR +    R DG ++ F++NA VI+      +G+ I GP+ +E  D  + RI S A  ++
Sbjct:    3 QQESRLKVADNSGAREILTIKVLGGSGR----KTANIGDVIVATVKQATPGGVVKAHDVVKAVIVRTKSGVHRADGSYIKFDENAAVIIRDDKTPQGTRIFGPVARELRDKDFMRIVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_DESRM (50S ribosomal protein L14 OS=Desulfotomaculum reducens (strain MI-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +  ADNTGA+ L  I V G  G L R  S  VGD+++A+VK+  P     +  V+  V+VR  K  RR DG ++ F++NA V++      +G+ I GP+ +E  +  + +I S A  ++
Sbjct:    3 QVQTILKAADNTGARKLMCIRVMG--GSLRRYAS--VGDIIVASVKEATPGGVVKKGDVVKCVVVRTSKEVRRPDGSYIKFDENAAVVIKDDKTPRGTRIFGPVARELREKDFMKIVSLAPEVI 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CLOD6 (50S ribosomal protein L14 OS=Clostridium difficile (strain 630) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADN+GAK L  I V G  G   R  +  +GD+++ATVK   P     + KV+ AVIVR ++  RR DG ++ F++NA VI+       G+ I GP+ +E  D
Sbjct:    3 QQESRLRVADNSGAKELLCIRVLG--GSKRRYGN--IGDVIVATVKSATPGGVVKKGKVVKAVIVRSKQGVRRNDGSYISFDENAAVIIKDDKTPVGTRIFGPVARELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CLOCE (50S ribosomal protein L14 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 375
            Q Q  +  ADNTGAK L  I V G   R      A +GD+V+A+VK   P     +  V+  VIVR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:    3 QVQSRMKVADNTGAKELMCIKVLGGSWR----KYANIGDVVVASVKNATPGGVVKKGDVVKCVIVRSKKGVRRPDGSYIRFDENAAVIIKDDKNPRGTRIFGPVARE 105          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CHLAD (50S ribosomal protein L14 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 423
            Q Q  +  ADNTGAK +  I V G     +R+    VGD+++A+VK+  P  + K   V+ AVI+R  K + R DG  + F+DNA V++  +   +G+ I GP+ +E  +  + RI S A  ++
Sbjct:    3 QPQTRLKVADNTGAKEIMCIRVLGG----SRVRYGRVGDIIVASVKEATPGGQVKKGDVVKAVIIRTAKEYGRPDGSHIRFDDNAAVLIGKENNPRGTRIFGPVARELREKQFMRIVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_BACP2 (50S ribosomal protein L14 OS=Bacillus pumilus (strain SAFR-032) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADN+GA+ +  I V G  GR     +A +GD+++ TVK+  P     + +V+ AVIVR +   RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:    3 QQETRLKVADNSGAREVLTIKVLGGSGR----KTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRNDGSYISFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_ANOFW (50S ribosomal protein L14 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q +  +  ADN+GA+ + +I V G  GR      A +GD+V+ATVK   P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E  +  + +I S A  ++
Sbjct:    3 QQETRMKVADNSGAREVLVIKVLGGSGRRY----ANIGDIVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRTDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELREKDFMKIVSLAPEVI 122          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL14_SYNS98.065e-1134.6850S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_PROMT8.065e-1136.2150S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PROM18.065e-1136.2150S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_LACPL8.065e-1135.4850S ribosomal protein L14 OS=Lactobacillus plantar... [more]
RL14_DESRM8.065e-1135.4850S ribosomal protein L14 OS=Desulfotomaculum redu... [more]
RL14_CLOD68.065e-1138.1850S ribosomal protein L14 OS=Clostridium difficile... [more]
RL14_CLOCE8.065e-1139.2550S ribosomal protein L14 OS=Clostridium celluloly... [more]
RL14_CHLAD8.065e-1135.4850S ribosomal protein L14 OS=Chloroflexus aggregan... [more]
RL14_BACP28.065e-1135.4550S ribosomal protein L14 OS=Bacillus pumilus (str... [more]
RL14_ANOFW8.065e-1133.8750S ribosomal protein L14 OS=Anoxybacillus flavith... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
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