CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.759e-27
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:   30 ADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKWVRIGSIASIIV 141          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.759e-27
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            ADN+GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+R +V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:   30 ADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.759e-27
Identity = 58/115 (50.43%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + C DNTGA+ + IISVK  +G  NR+P   +GDM + +VKKG P++RK+++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:   18 IECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAERFPKIGTTASMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:   18 ITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ L I SV G +GR NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:   18 ITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRKO (50S ribosomal protein L14P OS=Pyrococcus kodakaraensis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.048e-26
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   88 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            ADN+GAK + II V G KG   RL +A VGDMV+ATVKKG+PD+R +V+ AV+VRQRK +RR DG+ + FEDNA  IV P+G  +G+ I G I +E A+ W R+ S A+ ++
Sbjct:   30 ADNSGAKVIQIIGVVGYKGTRRRLAAAGVGDMVVATVKKGRPDMRHQVVRAVVVRQRKEYRRLDGMRVKFEDNAAAIVTPEGVPRGTEIRGAIAREAAERWVRLGSIASIVL 141          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   85 CADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            CADN+GAK L +I+V   + R +RLPSA VGD     VKKG  +LRK+V  AVI+RQ+ P RR +GV + FEDNA V++ P+GE KG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:   28 CADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 56/117 (47.86%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            VN ADN+GAK + +I V G   K    R+P   VGDMV+ +V++GKP++RK+++ A++VRQR+P+RR DG ++ FEDNA VIV  +G++KG+ + GP+  E A  WP++AS A  I+
Sbjct:   28 VNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GPI +E A+ +P+I + A+ IV
Sbjct:   18 VPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 57/115 (49.57%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:   18 IACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL14_PYRHO2.759e-2755.3650S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB2.759e-2755.3650S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_METBU2.759e-2750.4350S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_HALSA6.146e-2752.1750S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS36.146e-2752.1750S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_PYRKO1.048e-2653.5750S ribosomal protein L14P OS=Pyrococcus kodakarae... [more]
RL14_NITMS2.336e-2651.3350S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_CALMQ2.336e-2647.8650S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_METBF5.203e-2651.3050S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC6.796e-2649.5750S ribosomal protein L14P OS=Methanosarcina aceti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
back to top