CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V  ADN+GAK + +I V G   K    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 56/115 (48.70%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + C DNTGAK + IISVK  +G  NR+P A +GDM + +VKKG P++RK+++ AV+VRQ++ +RR DG+ + FEDNA VI +  G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:   18 IACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V  ADN+GAK + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ L +ISV G  G  NR P A +GD +  +V KG P++R++V+ AV+VRQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A  +  +ASAA  IV
Sbjct:   18 ITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V CADNTGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AVIVRQRK  RR DG  + FEDNA VI++   E +G+ I GPI +E A+ +  IAS A  IV
Sbjct:   18 VTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ L +ISV G  G  NR P A +GD V  +V KG P++R++V+ AV+VRQRKP RR +G  + FEDNA VI++   E +G+ I GP+ +E A+ +  IAS A  IV
Sbjct:   18 ITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.373e-25
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V  ADN+GA+ + +I V G   +    R+P A VGDMV+  V++GKP+LRK++  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ IV
Sbjct:   28 VPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIIV 144          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            V  ADN+GAK + +I V G   +    R+P A VGDMV+  VK+GKP+LR+++   ++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:   28 VPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 54/115 (46.96%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ L + S+ G  G  NR P A +GD +  +V KG P++R++V+ AV++RQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A+ +  IAS A  IV
Sbjct:   18 ITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 423
            + CADNTGA+ + I+SV G  G   R P   +GD+   TVKKG PD+RKK++ AV++RQ+K  RR +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P++ S A  IV
Sbjct:   18 LTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL14_PYRCJ1.514e-2550.4350S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_METMA1.514e-2548.7050S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_PYRAE1.977e-2549.5750S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]
RL14_HALMA1.977e-2549.5750S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_HALWD2.582e-2552.1750S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_HALLT2.582e-2549.5750S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_PYRIL3.373e-2549.5750S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_PYRAR5.753e-2548.7250S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_NATPD1.282e-2446.9650S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_METB62.186e-2446.9650S ribosomal protein L14P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
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