CK740134

Overview
NameCK740134
Unique NameCK740134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 423
            Q +  +  ADNTGAK +  I V G  GR      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GP+G+E  D  + RI S A  ++
Sbjct:    3 QQESRLKVADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVGRELRDKKFMRIVSLAPEVI 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ L  I V G   R      A +GDM++A VK+  P++   + +V+ AVIVR  K  +R +G+ + F+DNA V+VN +G  +G+ + GP+ +E  D  + +I S A  ++
Sbjct:    3 QPQSYLNVADNSGARRLMCIRVLGSSNR----KYANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARELRDFNFTKIVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADNTGAK +  I V G  G   R  S  VGD ++ +VK+  P+   K   V  AV+VR RK  RR DG ++ F+DNA V++ P+GEM+G+ + GP+ +E  D
Sbjct:    3 QQESRLKVADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N     +G+ + GPI +E  D  + +I S A  +V
Sbjct:    3 QTQSYLNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIISLAPEVV 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 423
            Q +  +  ADNTGAK L  I V G  GR      A +GD ++ATVK   P    K   ++ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D  + RI S A  ++
Sbjct:    3 QQESRLKVADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRELRDKKFMRIISLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 375
            Q Q  +N ADN+GAK L +I V G  G   R     +GD+V+A+VK+  P    K   ++ AVIVR RK  RR DG ++ F+DNAGV++N   E + + I GP+ +E
Sbjct:    3 QQQTILNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_SCEOB (50S ribosomal protein L14, chloroplastic OS=Scenedesmus obliquus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  +N ADN+GA+ L  I V G  GR     +A +GD+++A VK   P++  K   V+ AVIVR  K  RR++G+ + F+DNA V++N +G  +G+ + GPI +E  D  + +I S A  +V
Sbjct:    3 QPQSYLNVADNSGARKLMCIRVLG-GGR----QTATIGDVIIAVVKDALPNMPLKKSDVVRAVIVRTSKGVRRENGMMLCFDDNAAVVINKEGNPRGTRVFGPIARELRDRNFTKIVSLAPEVV 121          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 44/124 (35.48%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 423
            Q Q  ++ ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   R +V+ AV+VR R+  +R++G+ + F+DNA VI+N +G  +G+ I GP+ +E  +  + R+ S A  ++
Sbjct:    3 QIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARELRECNFARVVSLAPEVL 122          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:    3 QQESRLKVADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CK740134 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   64 QWQQPVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 384
            Q +  +  ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:    3 QQESRLKVADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CK740134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
RL14_BEUC14.569e-1439.5250S ribosomal protein L14 OS=Beutenbergia cavernae... [more]
RK14_STAPU4.569e-1437.1050S ribosomal protein L14, chloroplastic OS=Staura... [more]
RL14_GRAFK5.967e-1441.8250S ribosomal protein L14 OS=Gramella forsetii (st... [more]
RK14_PORPU5.967e-1438.4050S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RL14_THEFY7.793e-1438.7150S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RL14_FUSNN7.793e-1442.9950S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RK14_SCEOB7.793e-1439.5250S ribosomal protein L14, chloroplastic OS=Scened... [more]
RK14_ADICA7.793e-1435.4850S ribosomal protein L14, chloroplastic OS=Adiant... [more]
RL14_RENSM1.018e-1341.8250S ribosomal protein L14 OS=Renibacterium salmoni... [more]
RL14_ARTS21.018e-1341.8250S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6628 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740134 ID=CK740134; Name=CK740134; organism=Citrus sinensis; type=EST; length=596bp
AAATGTCGAAGCGAGGACGCGGAGGATCAGCAGGTAACAAGTTCAGGATG
TCACTGGGTTTGCCAGTGGCAGCAACCTGTGAACTGTGCTGACAACACTG
GGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAAGGTCGCCTC
AACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGCTACTGTGAA
GAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCGTCATTGTAA
GGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATGTACTTTGAA
GATAATGCAGGTGTTATTGTGAATCCAAAGGGAGAAATGAAGGGTTCTGC
CATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGCCGAGGATTG
CAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGATAACCTATA
TCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTTCATAGTAGG
AAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGTTGGTCTAGT
TTTGGAAGTGGTATGAAAGTTTGGAGTTTTGTTGATCTTGAAAAAA
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