CK740136

Overview
NameCK740136
Unique NameCK740136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740136_ssr16 microsatellite CK740136_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3631 contig Csv1_Contig3631:14..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 75/204 (36.76%), Postives = 132/204 (64.71%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPS--SINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIK---LIVLGIII 698
            ++I++ VARGTV+L+E++  + N + I+ Q L+KLP   S +  +Y+ D + F+    DG T   +A E+ GR +P AFL+ + + F K YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM++NI+KVLDRGE++ELLVD+TEN++     FR+Q  + R  MW++N+K+    ++VL +++
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVV 203          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 68/200 (34.00%), Postives = 126/200 (63.00%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKF-TYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            S++Y+ VARGTV+LAE +  + N + IA Q L+K+P + +   +Y+ D + F+    DG T   +A E  GR++P +FLE + + F + YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM++NI+ +LDRGE++ELLVD+T N++     FR+Q  +    +W++N K+ L+++ +++
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLL 199          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 68/199 (34.17%), Postives = 116/199 (58.29%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY+   + F+Y+  D   Y  +  +   R    +FL  VK+ F   Y G +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K+ +I++ + I
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSI 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 71/201 (35.32%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEE--ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   YG  +A TA+   +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+D+TENL   +  F+     + R M  +N+K+ +I++ + I
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSI 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 67/199 (33.67%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K+ +I++ + I
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSI 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 67/199 (33.67%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K+ +I++ I +
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISV 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 67/199 (33.67%), Postives = 114/199 (57.29%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY+   + F+Y+  D   Y  +  +   R     FL  VK+ F   Y G +A TA+   +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K+  I++ + I
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAIIVVVSI 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 67/199 (33.67%), Postives = 114/199 (57.29%), Query Frame = 3
Query:  102 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            +++++ VARGT ILA++    GNF  +  Q L K+PS  NK TY    + F+Y+  D   Y  +  +   R     FL  +K+ F   YG  +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K+ +I++ + I
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSI 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 66/203 (32.51%), Postives = 115/203 (56.65%), Query Frame = 3
Query:   90 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSINKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFTKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P +  K  Y  + H F+Y+ ++   +  +  E +G Q+P  FL  +++ F + YG   +  +        F   L+E M+Y   +P+  +K+  V  QVSE KG + D IEK + RGEKIE++VD+TE L+S++  F+     ++RK+W+QN K+  I +G+++
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNS-PTATYDPFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKL-AIAIGLVV 198          
BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: SYB1_SCHPO (Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe GN=syb1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 32/75 (42.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  477 KLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKL-IVLGIII 698
            K A ++ Q+ +  G+M +NI KV +RGE+++ L D+T+NL   AQ FR+   ++R+KMW+++M+++L I++GIII
Sbjct:   31 KTAAIQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMRMRLCIIIGIII 105          
The following BLAST results are available for this feature:
BLAST of CK740136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA713_ARATH7.042e-3436.76Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH4.272e-3134.00Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE1.052e-2934.17Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.052e-2935.32Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_HUMAN3.998e-2933.67Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.998e-2933.67Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_RAT5.222e-2933.67Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_PONAB8.908e-2933.67Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI2.426e-2632.51Vesicle-associated membrane protein 7A OS=Dictyost... [more]
SYB1_SCHPO2.604e-1242.67Synaptobrevin homolog 1 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6630 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740136 ID=CK740136; Name=CK740136; organism=Citrus sinensis; type=EST; length=700bp
CTCTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTCTTGTTG
TTGTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGGGCAGCA
ATCGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAGCTGAGT
ACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGTCTCCAG
AAACTTCCTTCTAGTATCAACAAGTTCACTTACAATTGCGACGGCCACAC
TTTTAACTACCTCGTTGATGACGGCTTCACTTACTGTGTGGTTGCAGTTG
AATCTGTTGGTCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTGAAAGAG
GATTTTACAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCGGTCGCTAA
CGGCTTGAACAAGGAGTTTGGGCCCAAATTGAAGGAGCATATGCAGTACT
GCATCGATCATCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAGGCTCAG
GTGTCAGAAGTCAAAGGTGTTATGATGGATAACATAGAGAAGGTTCTTGA
TCGTGGAGAGAAAATTGAGCTTCTGGTGGATAGAACAGAGAATCTTCGCT
CACAGGCGCAGGATTTCAGACAGCAGGGAACCCAGATGAGGAGAAAGATG
TGGTTTCAGAACATGAAGATCAAACTGATTGTTCTGGGAATCATAATTGC
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