CK740136

Overview
NameCK740136
Unique NameCK740136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK740136 vs. ExPASy Swiss-Prot
Match: SNC1_YEAST (Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae GN=SNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 29/90 (32.22%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  429 LKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMKIKLIVLGIII 698
            L EH +    + +  S+ A+++A++ +  G+M DNI KV +RGE++  + D+ +NL   AQ F++   ++R+ MW++++K+K+ +  +II
Sbjct:   12 LSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKMCLALVII 101
The following BLAST results are available for this feature:
BLAST of CK740136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SNC1_YEAST4.910e-1132.22Synaptobrevin homolog 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6630 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740136 ID=CK740136; Name=CK740136; organism=Citrus sinensis; type=EST; length=700bp
CTCTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTCTTGTTG
TTGTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGGGCAGCA
ATCGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAGCTGAGT
ACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGTCTCCAG
AAACTTCCTTCTAGTATCAACAAGTTCACTTACAATTGCGACGGCCACAC
TTTTAACTACCTCGTTGATGACGGCTTCACTTACTGTGTGGTTGCAGTTG
AATCTGTTGGTCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTGAAAGAG
GATTTTACAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCGGTCGCTAA
CGGCTTGAACAAGGAGTTTGGGCCCAAATTGAAGGAGCATATGCAGTACT
GCATCGATCATCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAGGCTCAG
GTGTCAGAAGTCAAAGGTGTTATGATGGATAACATAGAGAAGGTTCTTGA
TCGTGGAGAGAAAATTGAGCTTCTGGTGGATAGAACAGAGAATCTTCGCT
CACAGGCGCAGGATTTCAGACAGCAGGGAACCCAGATGAGGAGAAAGATG
TGGTTTCAGAACATGAAGATCAAACTGATTGTTCTGGGAATCATAATTGC
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