CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:808..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39
Identity = 89/206 (43.20%), Postives = 113/206 (54.85%), Query Frame = 1
Query:    4 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V+GVN + Y   +  ++SNASCTTNCLAPF KVL++KFG+ +G MTT HSYT DQ                  N++PTST                 NG A+RVPT N           K+   EEVNAAF+ +A+ ELKGIL   +EPLVS+D+                M  +MVKV++WYDNE GYS RVVDLA  + + G
Sbjct:  128 TVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKFGVKRGMMTTIHSYTNDQQILDLPHKDLRRARAAAENMIPTSTGAAKAVALVLPELKGKLNGGAVRVPTANVSLVDLVVELDKEVTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLAAYMTSKG 333          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.505e-38
Identity = 87/201 (43.28%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI+KG MTT H+YT DQ                  NIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V
Sbjct:  136 TIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLV 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.505e-38
Identity = 87/201 (43.28%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI+KG MTT H+YT DQ                  NIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V
Sbjct:  136 TIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLV 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 88/203 (43.35%), Postives = 105/203 (51.72%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            T V+GVN D +  +   IISNASCTTNCLAP VKVLD++FGI  G MTT H+YT DQ                  +I+PT+T                 +G+ALRVP PN               AEEVN AF+ +A   + G+L   DEPLVS D+                M D  VKV+AWYDNEWGYS RVVDL   VA
Sbjct:  129 TIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.949e-37
Identity = 85/201 (42.29%), Postives = 104/201 (51.74%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V+GVN D Y   + IISNASCTTNCLAP  KVLD +FGI++G MTT H+YT DQ                  NIVPTST                 +G ALRVP P            K    E++NAAF+ +A+  LKGIL   D P+VS D                 + D+  KV++WYDNEWGYS R+VDL  +V
Sbjct:  136 TVVLGVNDDKYDGSQNIISNASCTTNCLAPLTKVLDDEFGIVRGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPNLKGKLDGYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALV 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.313e-36
Identity = 81/201 (40.30%), Postives = 106/201 (52.74%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V+G N D  KP+  IIS ASCTTN +AP VKVL +KFGI+ G +TT HSYT DQ                  NI+PT+T                 +G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                 +G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  130 TVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 80/206 (38.83%), Postives = 108/206 (52.43%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATT 615
            P +VVGVN   YKPD  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPTP+           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL   +A+T
Sbjct:  134 PMFVVGVNEHEYKPDLAIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 83/201 (41.29%), Postives = 100/201 (49.75%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V GVN D Y   + IISNASCTTNCLAP  KVL  +FGI+KG MTT H+YT DQ                  N+VPTST                 +G ALRVP P           SK     E+NA F+++A+  LKGIL   D P+VS D                 +     KV++WYDNEWGYS R+VDL  +V
Sbjct:  136 TIVFGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDQFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNVVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADLSKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIA-SQAKVVSWYDNEWGYSNRLVDLVGLV 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 81/203 (39.90%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    4 TYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            T V+GVN D Y P +  +ISNASCTTNC+AP  KVLD+ FGI+KG MTT H+YT DQ                  NI+PT+T                 +GIA+RVP P            ++   +EVNAAF+++AD+ +LKGIL   ++ +VS D                      VK++ WYDNEWGYS R+VDL   V
Sbjct:  130 TIVMGVNQDKYDPANHHVISNASCTTNCVAPMAKVLDENFGIVKGLMTTVHAYTNDQRILDFPHKDLRRARAAAENIIPTTTGAAKATALVLPQLKGKLDGIAMRVPVPTGSATDLVVELQREVTKDEVNAAFKKAADDGDLKGILFYTEDAIVSSDITGDPASCTFDSSLTMVQEGKSVKILGWYDNEWGYSNRLVDLTVFV 332          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 80/206 (38.83%), Postives = 104/206 (50.49%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATT 615
            P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPTP+           K    +E+ AA +  ++  LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RVVDL   +A T
Sbjct:  134 PMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAAT 339          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_BACCE3.812e-3943.20Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_MYCTU5.505e-3843.28Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO5.505e-3843.28Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_BACSU3.568e-3743.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCAV7.949e-3742.29Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_THEMA2.313e-3640.30Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3PC_GINBI8.789e-3638.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MYCLE2.557e-3541.29Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_STRCO7.440e-3539.90Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PC_PINSY1.658e-3438.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
back to top