CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:808..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 79/204 (38.73%), Postives = 103/204 (50.49%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P YV+GVN   Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+ST                  G+A RVPT N           K    E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  128 PMYVMGVNEKTYDGKAAVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.165e-34
Identity = 76/209 (36.36%), Postives = 109/209 (52.15%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTGSE 624
            P +V+GVN  +Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL   ++   ++
Sbjct:  128 PMFVMGVNNTSYTKDINVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPTLNGKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISKVDAQ 336          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.693e-34
Identity = 81/200 (40.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            PT+VVGVN   Y  D + I+SNASCTTNCLAP  K+LD  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K T  EE+ AA + +A+ ELKGIL    + +VS+DFR               +  +  KV++WYDNEWGYS RV+DL
Sbjct:  129 PTFVVGVNHLNYNADTDKIVSNASCTTNCLAPIAKILDDNFGIVEGLMTTVHAMTATQPTVDGPSKKDFRGGRGAAQNIIPSSTGAAKAAALVLPQLKGKLTGMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDL 328          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 74/204 (36.27%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  128 PMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 74/204 (36.27%), Postives = 106/204 (51.96%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  128 PMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRAAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 79/199 (39.70%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +V GVN DAYKPD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  126 PMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 78/205 (38.05%), Postives = 106/205 (51.71%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD-NELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATT 615
            T V GVN      D+ I+SNASCTTNCLAP + VL QK GI++G MTT HS+T DQ                  +++PTST                 +GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF                +   + +V+AWYDNEWG+S R+VD A  +A T
Sbjct:  132 TVVYGVNHKDLTADDKIVSNASCTTNCLAPVLHVLQQKIGIVRGLMTTVHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTAAQMAKT 336          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 81/204 (39.71%), Postives = 102/204 (50.00%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P YV GVN DAY P  P ISNASCTTNCLAP  KV+  KFGI++G M+T H+ T  Q                   NI+P+ST                  G++ RVPT +           K+   +E+ AA +E+    LKGIL   ++ LVS DF                +  + VK+IAWYDNEWGYS+RVVDL   VA
Sbjct:  128 PMYVCGVNLDAYDPRRPSISNASCTTNCLAPLAKVIHDKFGIVEGLMSTIHATTATQKTVDGPSNKDWRGGRSVNNNIIPSSTGAAKAVGKVIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 74/209 (35.41%), Postives = 108/209 (51.67%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTGSE 624
            P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FGII+G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +++  A +++++NELKGIL   ++ +VS D                 +  + +K+++WYDNEWGYS+RVVDL   ++   ++
Sbjct:  128 PMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISKVDAQ 336          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.226e-34
Identity = 83/206 (40.29%), Postives = 107/206 (51.94%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V+GVN +AY P    IISNASCTTN LAP +KVL++ FG+ K  MTT HSYT DQ                  NI+PT+T                 +G+ALRVPT             ++  AEEVNAA + +A+  LKGIL+  ++ +V  D                 +G +MVKV AWYDNEWGY+ RV DL ++V   G
Sbjct:  126 TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKG 330          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_PODAN2.165e-3438.73Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_ASPNG2.165e-3436.36Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P1_SYNY33.693e-3440.50Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_COCP74.823e-3436.27Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM4.823e-3436.27Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P2_DROME4.823e-3439.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_ZYMMO6.299e-3438.05Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_OMPOL6.299e-3439.71Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_EMENI6.299e-3435.41Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_THEAQ8.226e-3440.29Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
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