CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:808..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 76/205 (37.07%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTG 618
            T V GVN +    +  ++SNASCTTNCLAP  KVL+   GI KG MTT H+YTGDQ                  +++PTST                 +G ++RVPTPN           + T  EE+N A   +A  +LKGIL   D+P VS+DF                M   +V+V++WYDNEWG+S R+ D A  +   G
Sbjct:  131 TVVYGVNHEKLTNEHLVVSNASCTTNCLAPVAKVLNDAVGIEKGFMTTIHAYTGDQPTLDTMHKDLYRARAAAMSMIPTSTGAAKAVGLVLPELAGKLDGTSIRVPTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTAVAMGKLG 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 77/199 (38.69%), Postives = 98/199 (49.25%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +V GVN DAY PD  ++SNASCTTNCLAP  KV++  F I++  MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  126 PMFVCGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEVLMTTVHATTATQKTVDGPSGKLWRDGRGACQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 77/204 (37.75%), Postives = 104/204 (50.98%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P +V GVN  +Y   + IISNASCTTNCLAP  KVL+ KFGI+KG MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K     E+NAA +E+++ ELKGIL   ++ +VS DFR               +  +  KV++WYDNEWGYS +V ++A ++A
Sbjct:  129 PMFVYGVNHTSYAGQD-IISNASCTTNCLAPIAKVLNDKFGIVKGLMTTVHAATATQKTVDGPSKKDWRGGRGILENIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 80/202 (39.60%), Postives = 100/202 (49.50%), Query Frame = 1
Query:    4 TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            T V GVN    K  + +ISNASCTTNCLAP VK L +K G++ G MTT HSYT DQ                  +++PT T                 +G A+RVPT N          ++ T  EEVN   + +A+ ELKGIL     PLVSVDF                 G  +VKV AWYDNEWG+S R++D A  +A
Sbjct:  133 TIVYGVNHGVLKATDTVISNASCTTNCLAPLVKPLHEKLGLVNGLMTTVHSYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVMPELDGRLDGFAVRVPTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATLTKVNG-TLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 81/205 (39.51%), Postives = 105/205 (51.22%), Query Frame = 1
Query:    1 PTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            P YV+GVN + Y P  + IISNASCTTNCLAP  KV++ KFGI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K T  E++  A +E+++ E+KG+L+  DE +VS DF                +    VK++AWYDNEWGYS RVVDLA  VA
Sbjct:  130 PMYVMGVNHEKYNPATDHIISNASCTTNCLAPLAKVVNSKFGIKEGLMTTVHATTATQKTVDGPSKKDWRGGRAVNGNIIPSSTGAAKAVGKVLPELKGKLTGMAFRVPTNDVSVVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVA 334          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 84/211 (39.81%), Postives = 104/211 (49.29%), Query Frame = 1
Query:   10 VVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVATTGSEVNTKS 639
            V GVN D    +   I SNASCTTNC+ P  KVL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+ +    +   T S
Sbjct:  132 VKGVNDDQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVS 339          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 76/199 (38.19%), Postives = 99/199 (49.75%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   YK D  I+SNASCTTNCLAP  KVL+ KFGI++G MTT HS T   +                  NI+P+ST                  G+A RVPT +           K    +E+ AA +  ++  LKGIL   ++ +VS DF                +  + VKV++WYDNEWGYS RV+DL
Sbjct:  130 PMFVVGVNEKEYKKDIDIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHSITATRKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDL 328          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 77/203 (37.93%), Postives = 101/203 (49.75%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 606
            P +VVGVN   YK +  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K    EE+ A  +  ++ +LKGIL   +E +VS DF                + +  VK+++WYDNEWGYS RV+DL  IV
Sbjct:  133 PMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIV 335          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 75/199 (37.69%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K    +E+  A +E ++ +LKGIL   ++ +VS DF                + D  VK+++WYDNEWGYS RVVDL
Sbjct:  133 PMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.646e-32
Identity = 76/199 (38.19%), Postives = 97/199 (48.74%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 594
            P +V GVN DAY PD  ++SNASCTTNCLAP  KV++  F I++G MTT H+ T  Q                   NI+P +T                  G+A RVPTPN           K    +E+ A   E++   LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  126 PMFVCGVNLDAYSPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_XANFL2.026e-3237.07Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_DROHY2.026e-3238.69Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_BACFR2.026e-3237.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PC_RALEH2.026e-3239.60Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PC_CHLRE2.026e-3239.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAAR2.026e-3239.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3PC_PETCR2.646e-3238.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.646e-3237.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.646e-3237.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_DROME2.646e-3238.19Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
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