CK740148

Overview
NameCK740148
Unique NameCK740148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.213e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  193 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.213e-38
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  191 PGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.196e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  191 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.196e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  188 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.196e-38
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 225
            PGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  187 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.480e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.480e-38
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.480e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  192 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.480e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  170 PGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.157e-38
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  190 PGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CK740148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB28_PEA3.213e-3896.05Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP3.213e-3897.37Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL4.196e-3896.05Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN4.196e-3897.37Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE4.196e-3897.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC5.480e-3896.05Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.480e-3896.05Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL5.480e-3897.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN5.480e-3897.37Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB29_MAIZE7.157e-3894.74Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6642 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740148 ID=CK740148; Name=CK740148; organism=Citrus sinensis; type=EST; length=390bp
CCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTA
GAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGC
CTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTA
GTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTAT
TTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACTAGTTT
GAGGGGATTGTATTTTCATTCAAAAAAAAAAAAAAAAAAA
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